Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0024 ATGGTGGTTGGGCAGCTTGTTCCTTCGAATTTGTTCCTGAATCGTTCTGCTGCGACCAGACACAGACACCTTCTTTGTGTTTCTGCAAATGACACAACCTCAACCAATAACACGGATAACGGTTCTCCATTCTCAAGTTTCGGAAGACTCAAGGCCCAGAAAGTGAAGACTCTCCTGGTCCACAGAAGAGGAAAGGACCAAAGCCATAGACGCCCCGTTCACCTTGAAGATGATGATGATTATGTAGCCACCCCTAGACCCCGACGCTCTCAGTCTCGTACACGAGGAGGAGAAAGATGGGATATGATTCCCAATTACACTCCACCGGCACAAAGCAAATCGGTGAGCGACACCAAGTTTTTCAGCCTCAAGTCCTTTAAAGAAATAGGGTGCAGTGAGTATATGATTGAATCCCTCCAAAAACTCTTGTTTAGCCGGCCTTCCCATGTACAGGCCATGGCATTCACACCTGTTATTAGTGGAAAGACTTGTGTCATTGCTGACCAGAGTGGTTCTGGTAAGACATTTGCTTATCTGGCTCCCATCATTCAGCGCCTTAGACAACAAGAGCTTGAAGGAATTATTAGTAAATCCTCTTCACAAGCTCCTAGTCCTAGAGTCCTTGTTCTTGCACCAACTGCTGAGTTGGCTTCTCAGGTCTTAGATAATTGTCGCTCCTTGTCTAAATCTGGCGTTCCATTCAAGTCTATGGTTGTCACCGGTGGTTTTCGACAAAAAACTCAACTGGAAAATTTACAGCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTTCTTTTCCTCATCAATCAAGGCTTCTTGCATTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATCCTTGATCAATTCATCACCAGTTGACACACAGTATTTATTTGTGACTGCAACTTTACCTAAAAATGTTTACACCAAATTGGTTGAAGTTTTTCCTGATTGTGAAATGATTATGGGGCCTGGCATGCACCGAATAAGTTCTCGCCTTCAAGAGATTATAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACTGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACCTGCAGAAAAGTTGAAAATTTATTAAAGCGTTTTGATAGAAAAGGAAATTGCGTGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGGAAGAGTTTACACGTTCTCCATCAAAAGGAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCACGGGGAATAGATTTTGCAAGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGACGGGTTGGAAGAACAGCCAGAGGTGCCAAGGGAGTGGGCAAGGCATTTATCTTTGTGGTTGGCAAGCAAGTATCCCTTGCACGCAAAATAATGGAAAGAAATCAGAAGGGTCACCCACTACATGATGTGCCTTCGGCTTATTAG 1593 0.4375 MVVGQLVPSNLFLNRSAATRHRHLLCVSANDTTSTNNTDNGSPFSSFGRLKAQKVKTLLVHRRGKDQSHRRPVHLEDDDDYVATPRPRRSQSRTRGGERWDMIPNYTPPAQSKSVSDTKFFSLKSFKEIGCSEYMIESLQKLLFSRPSHVQAMAFTPVISGKTCVIADQSGSGKTFAYLAPIIQRLRQQELEGIISKSSSQAPSPRVLVLAPTAELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLINQGFLHLTNLRCAVLDEVDILFGDEDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLQEIIVDCSGEDGQEKTPDTAFLNKKTALLQLVEESPVPRTIVFCNKIETCRKVENLLKRFDRKGNCVQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFARVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNQKGHPLHDVPSAY* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0024 530 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 30 528 - -
Gso6g0024 530 CDD DEADc 135 325 - -
Gso6g0024 530 Pfam Helicase conserved C-terminal domain 375 491 IPR001650 -
Gso6g0024 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 503 IPR027417 -
Gso6g0024 530 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 30 528 - -
Gso6g0024 530 Pfam DEAD/DEAH box helicase 149 325 IPR011545 GO:0003676|GO:0005524
Gso6g0024 530 MobiDBLite consensus disorder prediction 60 111 - -
Gso6g0024 530 MobiDBLite consensus disorder prediction 69 96 - -
Gso6g0024 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 124 152 IPR014014 GO:0003724
Gso6g0024 530 SMART helicmild6 402 492 IPR001650 -
Gso6g0024 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 339 IPR014001 -
Gso6g0024 530 Gene3D - 102 339 IPR027417 -
Gso6g0024 530 CDD SF2_C_DEAD 351 502 - -
Gso6g0024 530 Gene3D - 365 527 IPR027417 -
Gso6g0024 530 SMART ultradead3 143 354 IPR014001 -
Gso6g0024 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 530 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0024 Gso-Chr6 239955 243394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0024 123 513 Eukaryotic Initiation Factors Gene Family AT3G19760 26.786 2.89e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0024 K13179 - gmx:100780849 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0021 4 218757 222646 Gso6g0024 6 239955 243394 GST