Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0023 ATGGAAATTGATCTGGAGCTACCTATATGTGAGCATGAGATGCTTAAGAGTGGATCTAGTGGAAATGATGTTACAGATACAGCATGTGATATATACCTTGAGGAGCAAAGCATCAATCCTTCGTCAATGACTGAACACTCTAAGAAAGTTTTAAGTGAAAATGCTTTCTGTTGCCAGGATCAGGTAGATTTGAATTCCAATCAAGTGGATGCTATTGATAAATTTCCCTTTAAAGAACCACAGAATGGATTGGAATTTGAATCAAAGGAGGCTGCCTATTCGTTCTACAGAGAATATGCTCGTTCAGTGGGATTTGGCATCACAATAAAAGCCAGCCGATGCTCAAAAAAGTCTGGTAAATTTATTGATATTAAAATTGCTTGTTCCAGATTTGGAAGTAAGCGTGAGTCTGGTACAGTGGTTAATCCACGACCATGTAAAAAGACAGGCTGTAAGGCTGGTATCCATATTAAGAAGAAGCAAGATGGTAACTGGATCATATACAATTTTGTAAAAGAGCACAATCATGGGATCTGTCCTGATGATTTTTTCAGGGGTAGCAAACAAACAAGTATTGTAGCTTCTCAGAAGAAGGGTATGCAATTGGCTCTAGAGGAGGGAGATGTGCAGTCAATGATTGAATACTTTGTCTCTATGCAGTGTAAAAATCCCAACTTTTTCTATGCAATAGACTTGGATCAGAATAGACACTTGAGAACTGTATTTTGGGTTGACTCAAAAGGAAGACTTGATTATCAAAACTTCCATGATATTGTGTTGATTGACACTTTTTACCTGAGAAACAAATATAAAATTCCTTTTGTTCCTTTTGTCGGAGTCAACCATCACTTCCAGTACATTTTACTTGGATGTGCACTGGTTGGGGAGGAGACTGTTTCAGCTTTTATATGGTTAATGCGAGCATGGCTTAAAGCAATGAGTAACCTACCTCCCAAGGTTATTATTACAGACCAAGAGCAATTCTTGAAAGAAGCTGTTATGGAAGTGTTTCCAGATAAGCGTCATTGTTTCTGTCTATCACATATTTTATGTAAAATCACCAAGAACTTGGATTATATCATAGATCAAAATAATAATTTTATGGGAAAATTTGACAAATGCATTCATCATTCCTGTTCAGATGAGCAGTTTGAAAAGAGATGGTGGAAATTGATTAATAGATTTGAACTAAAGAATGATGAATGGGTTCAGTCATTGTATGAAGATCGTAAAAAGTGGGTGCCTACATTTATGCAGGACATTTCTTTGGCTGGATTGTCAACAACTGTAAGGTATGAAAGTATATCATCATCCTTCGACAAGTATATCTGTGTTGATTCTACCTTTAAGGAGTTTATTGAACAGTATAAAGTTTTCTCTATAGACAGTTTTGACATGGAAGCCAAAGCTGACTTTGAAACAAAACAAAAGCAACCTGCATTAAGGTCTTTATCACCTTTTGAGAAGCAGCTATCTACAATTTATACAGATGCCATATTTAGAAAATTTCAGTTGGAAATATTGGGAATGATGTCTTGCCATCTCCAGAAGGAAACAGAGAAAAGGGCAAATGGAACATTTCTTGTTGATGATTTTGAGGAGCAGAAGAAATTTATTGTTTCTTGGAAGGAAGCAGATTTGTATGTCAGTTGTTCATGTTGTTTGTTTCAATACAAAGGTTTTCTATGTAGACATGCAATACTTGTCCTTCAAAAGTCTGGCATAACCAACATTCCATCCCATTATATTTTAAAACGATGGATGAAAGATGCAAAGGCCAATCAATTTGTTGGTGATGTTATTACCAGGACTGCTCATCGAGTTCAACGTTTTAATGACCTTTGTAGGCAGGCCATTATATTAAGTGAAATTGGATCTTTATCTGAAGATACTTACCGTGTTGCATCCCAGGCCTTGGAAGAAATCTATAAACACTGTGTGAATGCAAACAATTTTGCTAGAAGCACTTTAGAGTCCAACAAGTTGGTTCTTAATGGTTTTGATGTTGAAGAGAAAAATGATGGTTGCCACAGGGCAAAGCCTACTAAGAAAAGGAAGTCATTTAATAAAAGGGAATGCTCTGATCCAGAAAGAATCAATATCAAGATGCTGGACGATTTCCAAAAGAGGGAACAGAGAAATACAAGAGCACACAACTTTGATAACTGTTACATTTCTCAGCAGGACATTCAAACTGTGGACTTGGATTCTAGAGCTTCGACTCTTGATGTCTATTATGGGGCTCAACGGAATGTGCTTGGAGATGGGCAATTGCATTCCATGCCAAGCCGTGGTTCACATTATGAAATGCAGCACAGCATGCAAAGACCGCTTCAAGGACTGCTCACTTTCAGAACGCCAACAGCTATGGAACAACCTATTAGGGACTCGCAGTTCCATGGCATTACATCAAAGCAACTAGATGTTGATAAATCACTTTCCTCTTAG 2448 0.3734 MEIDLELPICEHEMLKSGSSGNDVTDTACDIYLEEQSINPSSMTEHSKKVLSENAFCCQDQVDLNSNQVDAIDKFPFKEPQNGLEFESKEAAYSFYREYARSVGFGITIKASRCSKKSGKFIDIKIACSRFGSKRESGTVVNPRPCKKTGCKAGIHIKKKQDGNWIIYNFVKEHNHGICPDDFFRGSKQTSIVASQKKGMQLALEEGDVQSMIEYFVSMQCKNPNFFYAIDLDQNRHLRTVFWVDSKGRLDYQNFHDIVLIDTFYLRNKYKIPFVPFVGVNHHFQYILLGCALVGEETVSAFIWLMRAWLKAMSNLPPKVIITDQEQFLKEAVMEVFPDKRHCFCLSHILCKITKNLDYIIDQNNNFMGKFDKCIHHSCSDEQFEKRWWKLINRFELKNDEWVQSLYEDRKKWVPTFMQDISLAGLSTTVRYESISSSFDKYICVDSTFKEFIEQYKVFSIDSFDMEAKADFETKQKQPALRSLSPFEKQLSTIYTDAIFRKFQLEILGMMSCHLQKETEKRANGTFLVDDFEEQKKFIVSWKEADLYVSCSCCLFQYKGFLCRHAILVLQKSGITNIPSHYILKRWMKDAKANQFVGDVITRTAHRVQRFNDLCRQAIILSEIGSLSEDTYRVASQALEEIYKHCVNANNFARSTLESNKLVLNGFDVEEKNDGCHRAKPTKKRKSFNKRECSDPERINIKMLDDFQKREQRNTRAHNFDNCYISQQDIQTVDLDSRASTLDVYYGAQRNVLGDGQLHSMPSRGSHYEMQHSMQRPLQGLLTFRTPTAMEQPIRDSQFHGITSKQLDVDKSLSS* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0023 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2 36 761 - -
Gso6g0023 815 SMART 26again6 549 576 IPR006564 GO:0008270
Gso6g0023 815 Pfam MULE transposase domain 258 350 IPR018289 -
Gso6g0023 815 Pfam SWIM zinc finger 550 572 IPR007527 GO:0008270
Gso6g0023 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 761 IPR031052 GO:0006355
Gso6g0023 815 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
Gso6g0023 815 ProSiteProfiles Zinc finger SWIM-type profile. 536 574 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0023 Gso-Chr6 232701 237911 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso6g0023 MULE 1.9e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0023 - - gmx:100802811 1550.8