Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0012 ATGTTAATACAAACTTCTGTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGATCGGATGCCTAGTGGTGAAACTTGGCAGGTGGGTCTGAAATGCAATAAGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTAGAAGAAGATAAAAGGAATGCTGATGATCCTTACAGATCAAGCTGTTTAGTTAGCTTTGGTCAGCCGTCAACTGCTAGTATAATGACAGAAAATACTACACCTAATATGGTATACAGGAGAAAGAAGCTCTGTAAGGACTCAAATTTCGACCTAGGGCCAACTAATGTGCAGGCAAGTGCAAACTGCCCTTCAGTCATAAGTTCCGCTGCACATTTATCATCAGCGGAGGATCAGCCAACTGGTTTTCAAGTTAAGCATGAAATTGAAATGGTTAAAGATCCTACCATGCCTTCAGTCTTATTTGATAGAGTAGCCAAAGATAGCACACATAAAAACTTAGGTATTAATAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAAATATGGAAACTGAAATGGATGAAACTGGTGAATGCTCCTCCAGTATAATAGTCATGGATTGCACAAGGGAAGAAGTAACAGAAAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTCTTAAAGAAGATTCCCCTGTAGATAATGTGGCTTCTGGGGAAGATGCTGTTACCACTGGTAATAACTGCTGTTCCAGGTCATGCAAAATATGTGGTGATTTAGACAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATGCATATCATCTGTCTTGCTACAATCCACGTTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAGAGGCAGAAAATTCTCAAGGAGACAGTTATCAGATCACCAAGTATCCACAATGAATTGGGCAAATGTAGAACTGCCCCAGTTAAGGCTGAATTGAATCCCATACTGTTGATGTTAAGAGACACCAAGCCCTATACAACTGGTGTGCGAGTTGGTAAAGGTTTTCAAGCAGAAGTTCTTGACTGGTCAGGCCCGATGAAAAGTGATGAAGATGCCCTTCCTGAACCATTGGAAATTAGTCCTTCAGAATTTTATAAATTGCTGGGAGAGAATATGAGAAATCCTACTAAACTTAGTTCCATTGGTAATTGGATTAAATGTCAGGAGGTTTTAGATAGAGCCAATGAAACTATATGTGGAAAGTGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTGATGACTGGGATTGCTTTTGTGCTATCCATTGGAATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTACTGAAGCAACTGAAGTATATAGAAATGCTACGGCCTCGACTTGCTGCTAAGCGGAAAAAATCAGATTGCACACATAATAGTGAATGA 1464 0.3948 MLIQTSVLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVGLKCNKYPLDWCRKAEPVEEDKRNADDPYRSSCLVSFGQPSTASIMTENTTPNMVYRRKKLCKDSNFDLGPTNVQASANCPSVISSAAHLSSAEDQPTGFQVKHEIEMVKDPTMPSVLFDRVAKDSTHKNLGINSVNDSCSSSKPNMETEMDETGECSSSIIVMDCTREEVTEKDFCINILRSHGLLKEDSPVDNVASGEDAVTTGNNCCSRSCKICGDLDSSLNMLLCDHCEDAYHLSCYNPRLKKLPIDEWFCHSCLKKRQKILKETVIRSPSIHNELGKCRTAPVKAELNPILLMLRDTKPYTTGVRVGKGFQAEVLDWSGPMKSDEDALPEPLEISPSEFYKLLGENMRNPTKLSSIGNWIKCQEVLDRANETICGKWRRAPLFEVQTDDWDCFCAIHWNPSHADCAVPQELETDQVLKQLKYIEMLRPRLAAKRKKSDCTHNSE* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0012 487 ProSitePatterns Zinc finger PHD-type signature. 252 296 IPR019786 -
Gso6g0012 487 PANTHER REMODELING AND SPACING FACTOR 1 21 480 - -
Gso6g0012 487 SMART PHD_3 251 297 IPR001965 -
Gso6g0012 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 317 IPR013083 -
Gso6g0012 487 SUPERFAMILY FYVE/PHD zinc finger 236 301 IPR011011 -
Gso6g0012 487 ProSiteProfiles Zinc finger PHD-type profile. 249 299 IPR019787 -
Gso6g0012 487 ProSiteProfiles Zinc finger CW-type profile. 396 456 IPR011124 GO:0008270
Gso6g0012 487 Gene3D - 400 465 - -
Gso6g0012 487 Pfam PHD-finger 252 298 IPR019787 -
Gso6g0012 487 PANTHER HISTONE ACETYLTRANSFERASE 21 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0012 Gso-Chr6 157168 166011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0012 252 297 C2H2 Transcription Factor Family AT3G01460 43.478 1.03e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso6g0012 PHD 3.8e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0012 - - gmx:100800660 1016.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0014 4 156836 168359 Gso6g0012 6 157168 166011 GST