Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0006 ATGGAGGGCTCAAAGGAAAACCGTGTGCCTCCGCTTCCGCTCATACCCTCTTCGAATCTTCAACAAGGCGGTGGTCCAAGAATGAAGCGCCTACTCCATCACCATCACCGGCTGCCTCTCGGCAACATCAGTCAGAATGTTATGCTTCATTCTCATGTCAACAAACTAGATCTTGCCCGCAAGTTTACGCCACACACAGTTCAGCACCACTTCCCTCAGCCACATCCACAGCCTCAAGAAAATAAGAAACAGAACCTTTTGGCCCCGACCCCGAGTTACCAGTTAGATTGTGATATCGTAGATATTGATGACGACGATGGGGATGGCAGTGATGATGCCGTTCCGGTATTTGTCAAGCACACTGAAGCCATGCTTGACGAAATTGACAAGATAGAGGAAGTTGAAATGGAAGATGTAGAGGAGGAACCTGTTTTGGACATCGATGCCTGTGATAGGAAAGATACACTGGCAGTGGTTGAGTACATAGATGATATATACAGTTTCTACAAGGATATTGAGAATTCGAGCCGTGTCTCTCCAAATTACATGAATAGTCAATTTGACATTAATGAAAGGATGAGGGCTATTCTTATTGACTGGCTTGTTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACGTTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCGTCAGGCAGTGATCAGAAAGAAACTTCAGTTAGTTGGTGTAACAGCCATGCTAATAGCTTGTAAGTATGAGGAGGTCTCAGTTCCTACCGTTGAGGATTTTATTCTCATAACAGACAAGGCATATACAAGAAATGAAGTTTTAGATATGGAGAAATTAATGATGAACATCTTGCAATTCAAGTTGTCTGTGCCTACTCCATACATGTTCATGAGAAGATTTCTTAAGGCAGCTCATTCTGATAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGGTCGAGCTTTGCTTGGTAGAATGCAAAATGCTGAAGTTTTCACCATCTTTGCTGGCTGCTGCAGCCATTTACACAGCTCAATGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACTACCGAGTGGTACACTGATTACTCAGAAGAGAAACTTCTTGAATGCTCAAGGCTGATGGTTACTTTCCATCAGAAAGCTGGATCGGGGAAACTCACAGGTGTATATAGAAAGTACAATACATGGAAGTATGGCTGTGCCGCGAAAATAGAACCAGCCCTGTTTCTACTGGATAATTAA 1248 0.4319 MEGSKENRVPPLPLIPSSNLQQGGGPRMKRLLHHHHRLPLGNISQNVMLHSHVNKLDLARKFTPHTVQHHFPQPHPQPQENKKQNLLAPTPSYQLDCDIVDIDDDDGDGSDDAVPVFVKHTEAMLDEIDKIEEVEMEDVEEEPVLDIDACDRKDTLAVVEYIDDIYSFYKDIENSSRVSPNYMNSQFDINERMRAILIDWLVEVHYKFELLEETLFLTVNLIDRFLERQAVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLDMEKLMMNILQFKLSVPTPYMFMRRFLKAAHSDKKLELLSFFLVELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTTEWYTDYSEEKLLECSRLMVTFHQKAGSGKLTGVYRKYNTWKYGCAAKIEPALFLLDN* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0006 415 Pfam Cyclin, C-terminal domain 292 408 IPR004367 -
Gso6g0006 415 SUPERFAMILY Cyclin-like 154 289 IPR036915 -
Gso6g0006 415 PANTHER CYCLINS 65 410 IPR039361 -
Gso6g0006 415 SMART cyclin_7 296 378 IPR013763 -
Gso6g0006 415 SMART cyclin_7 199 283 IPR013763 -
Gso6g0006 415 SUPERFAMILY Cyclin-like 291 408 IPR036915 -
Gso6g0006 415 PANTHER CYCLIN-B2-3-RELATED 65 410 - -
Gso6g0006 415 CDD CYCLIN 193 282 IPR013763 -
Gso6g0006 415 MobiDBLite consensus disorder prediction 1 27 - -
Gso6g0006 415 Gene3D - 178 290 - -
Gso6g0006 415 Pfam Cyclin, N-terminal domain 164 290 IPR006671 -
Gso6g0006 415 ProSitePatterns Cyclins signature. 194 225 IPR006671 -
Gso6g0006 415 CDD CYCLIN 290 377 IPR013763 -
Gso6g0006 415 Gene3D - 164 405 - -
Gso6g0006 415 SMART Cyclin_C_2 292 409 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0006 Gso-Chr6 112739 115605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0006 12 413 Core Cell Cycle Gene Families AT1G20610 55.504 4.54e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0006 K21777 - gmx:100812029 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0007 4 102722 105427 Gso6g0006 6 112739 115605 GST