Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0004 ATGGAATATGGTGGGTTGGTGCAGAATGCATATGGTTCATATGGGAGCTTCTCAGATATTCTTGGCCCAGAAACGGATTTCATCGATGAGCTGTTTGTAGAAGGATGCTGGCTGGAAACAAGGGTTGGATCGTACCTGAATTGTGGCACGGAGGCTAATTCTTCAAAGTCAAACACGATGAGGAGCATGGAGTCGACGCAAATAATATTCCAACAAGAAGAATCATTACCAGACCCGGAAATTAGTTTGATGGTGGGGAAGAGATGGTGGATTGGGCCAAGGGAAAATCCGGGTCCATCTTCCTCTGTGAAAGAGAGATTAGTGATTGCTGTTGGGTACTTGAAAGAATACGCCAAGAATTCCAATTTGCCGATTCAGGTGTGGGTGCCCGAACGTAGATCTGCACGTGCTCAGCCTCAGGATAATATTTACCCATACGCCGCCGCGCTTCTTAATGGGGATGCAGCAGCTTTTCAGATTCAAGAGGATTGGGTTCATGTTAATGATCAGTACTGGACTCCCAACGTCCGCTTCTTCAGAAGTCACGAGTACCCGCGCCATCTCCGTACTCCTGGATCTCTCGCACTTCCTGTCTTTGAGAGAGGCACTGCTATGTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCTCCCGACCTTCAGTGTACTGTTGATTTTACGAGCAGTACTTCTTCTCATCATCACAACTTCATTCCACCAGCCGTGACCGTCAAGGGCTTTGACGAGCTGTACCAAAGTGCATTAAATGGGATAGTACAAGTTTTGACGTGTGTATGCAAAGCGCATAACTTGCCTTTAGCTCTGACATGGGCTCCCTGCATCCAACAAGCAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGATGAATTATGTGTCGACTGTGTATGCTGCTAGTTTTGTGGCGGATGTAGAGCTATTGGGTTTCCTGGAAGCCTGCTCTGAGTGCCACCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAATGACATTACTTCCTTCAGCAAGGCGGAGTATCCTCTGGCACATCATGCTAACATGTTTGGCTTGCATGCTGCTCTGGGCATTCCACTCCGGAGTGCCTCCGCTGATTTTGTTTTAGAATTTTTCCTGCCAAAGGATTGCCATGACACCCAAGACCAGAAGCAGTTGCTCAACTCCTTGTTTATGCTAGTGCAACAAGCTTGCCGGAGTTTGCATCTTGTCATGGAGGAGGAGGAGGAACTAATCGCGTTGCCGTCCGTCGTTGGCAAAGAAATGGAATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACTGCAGCAATACTAATGAGCAGGTCAGTGTTGGTGTTGAGAGTACTGCAGCTTTTTGTGGCCGCCGGGTTGGCCGGAAATCAGCTGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCAGTTCTTCGACAATACTTTGCAGGAAGCCTGAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTAAAAAGGATATGCAGACAACATGGGATCACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCTTTAAGAAAACTTCAACTTGTGATTGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTCCCAGAGTTGAGCTCTGCAGCCAATGGCGTTTCTGAATCATCCAACATCAATAATAATAATAATGATAATTCTAAGTTTTTTTCTGAATATAACCAAGGTCAAGGAGCTACTACATTCAAATCCCCAACAACTTCGCCTTGCAGTCAGACCACTATTGTGATGTCAGAGAGCCAACCACTTGGACTTGGTGCATCAGTCCAGGTGGTCCAAGAGGAAGCAAAACATTTCGCCCACCAACATCTTGAGTCTCTACCTCCCTTGCCCCAATCTAGTACTAGTGTCTGGAACATGGGTACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATTCGCTTCAGCTTGCAACCAAATTGGGGATTCAGAGATTTGCAGAAGGAGATTTCAAGACGTTTCAATCTAAACGAGATTAGCAACATTCAGCTCAAGTATTTGGATGATGCTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGAGGAGTGTAAAGGCATAAATACATCATCTCAGTCTCAGAGCCGCACAATTAGACTCTTCCTCTTTCATGCTTCGCCTCTCAATCACGCAAATGCATTTCCAGGCACCAGCCCCAGCTCCTAG 2379 0.4687 MEYGGLVQNAYGSYGSFSDILGPETDFIDELFVEGCWLETRVGSYLNCGTEANSSKSNTMRSMESTQIIFQQEESLPDPEISLMVGKRWWIGPRENPGPSSSVKERLVIAVGYLKEYAKNSNLPIQVWVPERRSARAQPQDNIYPYAAALLNGDAAAFQIQEDWVHVNDQYWTPNVRFFRSHEYPRHLRTPGSLALPVFERGTAMCLGVVEILMPNNPPDLQCTVDFTSSTSSHHHNFIPPAVTVKGFDELYQSALNGIVQVLTCVCKAHNLPLALTWAPCIQQAGKSGCGHSNDEMNYVSTVYAASFVADVELLGFLEACSECHLLGGQGVVGTAFTTTKPCFANDITSFSKAEYPLAHHANMFGLHAALGIPLRSASADFVLEFFLPKDCHDTQDQKQLLNSLFMLVQQACRSLHLVMEEEEELIALPSVVGKEMESSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCSNTNEQVSVGVESTAAFCGRRVGRKSAGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSAANGVSESSNINNNNNDNSKFFSEYNQGQGATTFKSPTTSPCSQTTIVMSESQPLGLGASVQVVQEEAKHFAHQHLESLPPLPQSSTSVWNMGTFRVKATFGDEKIRFSLQPNWGFRDLQKEISRRFNLNEISNIQLKYLDDAREWVLLTCDADLEECKGINTSSQSQSRTIRLFLFHASPLNHANAFPGTSPSS* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0004 792 ProSiteProfiles PB1 domain profile. 691 776 IPR000270 GO:0005515
Gso6g0004 792 ProSiteProfiles RWP-RK domain profile. 501 582 IPR003035 -
Gso6g0004 792 PANTHER PROTEIN NLP2 29 786 - -
Gso6g0004 792 CDD PB1_NLP 692 775 IPR034891 -
Gso6g0004 792 SMART PB1_new 691 776 IPR000270 GO:0005515
Gso6g0004 792 Pfam RWP-RK domain 515 562 IPR003035 -
Gso6g0004 792 SUPERFAMILY CAD & PB1 domains 682 778 - -
Gso6g0004 792 PANTHER PROTEIN NLP8 29 786 IPR045012 GO:0003700
Gso6g0004 792 Pfam PB1 domain 691 775 IPR000270 GO:0005515
Gso6g0004 792 Gene3D - 692 776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0004 Gso-Chr6 56426 59621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0004 13 788 NLP Transcription Factor Family AT2G17150 40.975 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso6g0004 PB1 5.3e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0004 - - gmx:100798024 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0005 4 74419 77875 Gso6g0004 6 56426 59621 GST