Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2122 ATGGAGTACGGTGGGTCGCAGTCCCCAGGGGAGCAAGATGGTTCGGATTCCCAAGAGAGGAGGAAACGCTATCATCGTCATACTGCCAATCAGATTCAGAGGCTTGAGTCAATGTTCAAAGAGTGCCCCCATCCAGATGAGAAACAAAGGTTGCAATTAAGCAGGGAGTTAGGCCTGGCCCCGAGGCAGATTAAGTTCTGGTTCCAAAATAGGAGGACCCAAATGAAGGCCCAACACGAAAGAGCTGACAATTGTGCTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCCATCAGGGAGGCCTTGAAGAACGTTATCTGCCCTTCTTGTGGTGGCCCACCTCTCAATGACGATTCTTATTTTAATGACCATAAGTTGCGATTAGAGAATGCCCACCTCAAAGAAGAGCTTGATAGAGTGTCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAATGGCGAGTTTTGGAAACCAAGGGATGGTTGGTCCGGCTCCTGCTCCTTCCCTTAATCTTGATCTTCTTCCTGCTGGGACTTCCTCATCCATGCCAAATTTGCCTTATCAGCCTCCTTGCCTTTCGGACATGGACAAGTCTCTCATGTCAGACATTGCCTCCAATGCCATGGAAGAATTTCTCAGGCTCGTGCAGACAAATGAACCCTTGTGGCTTAAATCAAACGTCGACCGTAGAGATGTTCTTAGTTCTGATGCCTATGATAGAATGTTCTCCAAGCCCAATACTCGCTCCAAGAATCCTAATGTTCGAATTGAAGCATCCCGAGATTCTGGAGTCGTATTACTGAATAGTTTAGCTTTGGTTGATATGTTTATGGACCCAAACAAATGGATCCAACTTTTTCCCACAATTGTCTCAGTGGCAAGGACTATTCAAGTCATATCTTCTGGGGTCATGGGCAGTTGCAGTGGTTCTTTACAATTGATGTATCAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTCGGGAGTTTTACTTCCTGCGTTACTGTCAGCAAATTGAGCAGGGCACATGGGCAGTAATGGACGTTTCTTATGATTTTCCCCAAGATAGCCACTTTGCTCCTCAGTTTCGGTCTCATCGTTGTCCTTCTGGTTGCTTGATCCAGGACATGCCTGATGGGCATTCCAAGATTACTTGGATTGAACACGTAGAGATTGAAGATAAAACTCTTCCTCATCGGCTTTATAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTACTACCCTCCAGAGGATGTGTGAAAGATTTACTTATCTGATGGCTACAAGCAATCCTACCCGGGATAATCTTGGAGGAGTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACCGATTTTTGTGCCAGCATTAGCACATCAAGTGGCCATCGATGGACCACGCTCTCTGGGTTGAATGAAATCGTAGTAAGAGTCACTGTCCACAAAAGCTCAGATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACTGTCTTTAATTTCTTCAAGGATGAAAACAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTTCAAGAGGTTGCCAACATAGCAAATGGTTTGCACCCTGGTAACTGTATATCAGTTCTTCGAGCTTTCAACAACAGTCAGAACATGTTAATACTACAAGAAAGCTGCATAGATTCCTATGGTTCACTTGTGGTTTATTGCCCAGTTGATCTGCCATCCATCAACACAGCAGTAAGTGGTGAAGACCCTTCATACATTCCCCTACTACCAAATGGATTTACCATTTTGCCTGATGGTCAGCCTGACCAGGAAGGAGATGGAGCATCAACTAGCTCAAACACAAACAGGAATATAGCAAGGTCTGGTGGTTCACTAGTTACAATTGCATTCCAAATTCTAGTGAGCAGCTTGCCATCTGCTAAGGTCAATATGGAGTCGGTGACAACTGTTAACAATCTTATTGGCTCCACTGTCCAGCAAATAAAGTCTTCCCTAAGTTGTCCTACCTAG 2142 0.4533 MEYGGSQSPGEQDGSDSQERRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFNDHKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASFGNQGMVGPAPAPSLNLDLLPAGTSSSMPNLPYQPPCLSDMDKSLMSDIASNAMEEFLRLVQTNEPLWLKSNVDRRDVLSSDAYDRMFSKPNTRSKNPNVRIEASRDSGVVLLNSLALVDMFMDPNKWIQLFPTIVSVARTIQVISSGVMGSCSGSLQLMYQELQVLSPLVSTREFYFLRYCQQIEQGTWAVMDVSYDFPQDSHFAPQFRSHRCPSGCLIQDMPDGHSKITWIEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLTTLQRMCERFTYLMATSNPTRDNLGGVISSPEGKRSMMKLAQRMVTDFCASISTSSGHRWTTLSGLNEIVVRVTVHKSSDPGQPNGVVLSAATTIWLPTPPHTVFNFFKDENKRPQWDVLSNGNAVQEVANIANGLHPGNCISVLRAFNNSQNMLILQESCIDSYGSLVVYCPVDLPSINTAVSGEDPSYIPLLPNGFTILPDGQPDQEGDGASTSSNTNRNIARSGGSLVTIAFQILVSSLPSAKVNMESVTTVNNLIGSTVQQIKSSLSCPT* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2122 713 CDD homeodomain 20 79 IPR001356 GO:0003677
Gso5g2122 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 710 IPR042160 -
Gso5g2122 713 Pfam START domain 224 448 IPR002913 GO:0008289
Gso5g2122 713 SUPERFAMILY Bet v1-like 469 706 - -
Gso5g2122 713 SMART HOX_1 19 82 IPR001356 GO:0003677
Gso5g2122 713 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 710 - -
Gso5g2122 713 ProSitePatterns 'Homeobox' domain signature. 53 76 IPR017970 GO:0000981|GO:0006355
Gso5g2122 713 MobiDBLite consensus disorder prediction 640 660 - -
Gso5g2122 713 Gene3D - 7 91 - -
Gso5g2122 713 MobiDBLite consensus disorder prediction 1 26 - -
Gso5g2122 713 Gene3D - 222 448 IPR023393 -
Gso5g2122 713 ProSiteProfiles 'Homeobox' domain profile. 18 78 IPR001356 GO:0003677
Gso5g2122 713 CDD START_ArGLABRA2_like 218 447 - -
Gso5g2122 713 Pfam Homeodomain 21 76 IPR001356 GO:0003677
Gso5g2122 713 SUPERFAMILY Homeodomain-like 6 78 IPR009057 -
Gso5g2122 713 SMART START_1 223 448 IPR002913 GO:0008289
Gso5g2122 713 ProSiteProfiles START domain profile. 214 451 IPR002913 GO:0008289
Gso5g2122 713 SUPERFAMILY Bet v1-like 215 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2122 Gso-Chr5 44145133 44149053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2122 16 713 Homeobox Transcription Factor Family AT1G73360 63.068 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso5g2122 START 6.4e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2122 K09338 - gmx:100796042 1444.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2122 5 44145133 44149053 Gso8g0482 8 4446479 4451145 GST
Gso5g2122 5 44145133 44149053 Gso16g1745 16 38028128 38033276 PCT
Gso5g2122 5 44145133 44149053 Gso9g1385 9 37732888 37737565 PCT
Gso16g1745 16 38028128 38033276 Gso5g2122 5 44145133 44149053 PCT
Gso9g1385 9 37732888 37737565 Gso5g2122 5 44145133 44149053 PCT