Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2118 ATGTTAGTAGTCAATAACTCATCTCCCACTTCTGAGGCCGAGAATGGTACTGCTGCTGCCACTAATAAGAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGCTGTTGAAGAGGGAAACGCCGGTGGTGAAGAAGAGAGTGTTTGTATGCCCGGAGCCTAGTTGTTTGCACCATGACCCATGCCATGCTCTGGGTGATCTTGTTGGAATAAAGAAGCACTTCAGAAGGAAACACAGCAATCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTATGCGGTGCAGTCCGATTACAAAGCACATCTCAAAACTTGTGGCACCCGAGGACACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTCATTGAGCACCAAGACGCGTGCAACGTGGGGAGGTTGGGGCCAGAAACACAGCCACAGCCACAGACACAGACACAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACAGCTTCAAGCGAAACCAATTTCAGCAATGGAGCCCCTTGGCCCCAAAGCGGTACTGTAATAATTCCAAAGCCCTCCGTAACAGTATTAGAACCCTCCTCATACTCCAACCCTACTACCACTGCCGAAACCAACATCATCAACGACGTCCACCCCAACCTGGAGCTTCAGCTCTCTACAGCTACTCCTTCATCCAAAGCTAATTATAACCACTCCATACAGACACAGTTGCAGCTATCCATAGGGATAGGGTCCTTGGAAGAGCAGTTGAGGATAGCGATGGCTGAGAAAGCGTTGGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATCGAACTGGCTGAACTTGAGTTCACTAACGCCAAGAGGATAAGACAACAAGCGCTTGCGGAACTTGACAAAGCCTATGCCTTGAAGGACCATGCAATCAAGCACATCAATTCAACCATGCTTCAAATCACTTGCCTCGCTTGCAAGCACCATTTTCAATCGCCAACCTCCCACGACAACTCTTTCGTCTTCAGCTACATAACACAAGCTCAAAGCCAACTAGAAAAACATCGACTCAAACCCATTATTAACTCTTAA 1203 0.5004 MLVVNNSSPTSEAENGTAAATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLGPETQPQPQTQTQAVQAAACLSRTASSETNFSNGAPWPQSGTVIIPKPSVTVLEPSSYSNPTTTAETNIINDVHPNLELQLSTATPSSKANYNHSIQTQLQLSIGIGSLEEQLRIAMAEKALAEEARKQAKRQIELAELEFTNAKRIRQQALAELDKAYALKDHAIKHINSTMLQITCLACKHHFQSPTSHDNSFVFSYITQAQSQLEKHRLKPIINS* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2118 400 SUPERFAMILY beta-beta-alpha zinc fingers 51 149 IPR036236 -
Gso5g2118 400 Gene3D Classic Zinc Finger 114 195 - -
Gso5g2118 400 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 6 391 - -
Gso5g2118 400 Coils Coil 288 336 - -
Gso5g2118 400 Pfam Zinc-finger of C2H2 type 52 70 - -
Gso5g2118 400 PANTHER OS03G0310200 PROTEIN 6 391 IPR039288 GO:0009630
Gso5g2118 400 MobiDBLite consensus disorder prediction 1 38 - -
Gso5g2118 400 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Gso5g2118 400 Gene3D Classic Zinc Finger 30 93 - -
Gso5g2118 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Gso5g2118 400 MobiDBLite consensus disorder prediction 1 18 - -
Gso5g2118 400 SMART c2h2final6 52 74 IPR013087 -
Gso5g2118 400 SMART c2h2final6 93 123 IPR013087 -
Gso5g2118 400 SMART c2h2final6 129 156 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2118 Gso-Chr5 44085809 44087984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2118 14 390 C2H2 Transcription Factor Family AT2G01940 56.901 6.88e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g2118 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2118 K25871 - gmx:100798167 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2118 5 44085809 44087984 Gso8g0478 8 4389027 4391041 GST
Gso5g2118 5 44085809 44087984 Gso7g0913 7 10588872 10592551 PCT
Gso5g2118 5 44085809 44087984 Gso9g1400 9 37994091 37997756 PCT
Gso7g0913 7 10588872 10592551 Gso5g2118 5 44085809 44087984 PCT
Gso9g1400 9 37994091 37997756 Gso5g2118 5 44085809 44087984 PCT