Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2117 ATGGAAGGAGGATCAGGTGGCGAGAGGAACAGTAGTGTATACCGAGAGTGCTTGAGAAATCATGCAGCCAGCCTAGGAAGCTACGCCACGGACGGGTGCGGCGAGTACACGGTGGACGGCGCGGGGGGACTACAATGCGCCGCGTGCGGGTGCCACCGCAACTTCCACCGGAAAGTGAAGTACCTGGCGGCGGCTGAAAGCCCTCCCACGGAGTATGGGGGCAGCAACAGCAAGAAGCGGTTCAGGTCTAAGTTCACGGAAGATCAAAAGGAGAAGATGCTAGGGTTTGCGGAGAAGCTTGGTTGGAAGCTTCAGAGGAGGGATCTTGATGATGAGATAGAGAGGTTTTGCCGAAGCGTTGGGGTGAGTAGGCAAGTCTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCCTCCTCCTCTTCTACCGCCGCCAATGTCTCCTCCCTCACCCAGTAA 459 0.5556 MEGGSGGERNSSVYRECLRNHAASLGSYATDGCGEYTVDGAGGLQCAACGCHRNFHRKVKYLAAAESPPTEYGGSNSKKRFRSKFTEDQKEKMLGFAEKLGWKLQRRDLDDEIERFCRSVGVSRQVFKVWMHNHKNSSSSSSTAANVSSLTQ* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2117 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 8 144 - -
Gso5g2117 152 Gene3D - 64 142 - -
Gso5g2117 152 Pfam ZF-HD protein dimerisation region 13 59 IPR006456 -
Gso5g2117 152 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 59 IPR006456 -
Gso5g2117 152 SUPERFAMILY Homeodomain-like 70 136 IPR009057 -
Gso5g2117 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 144 - -
Gso5g2117 152 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 14 58 IPR006456 -
Gso5g2117 152 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 78 136 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2117 Gso-Chr5 44074116 44074951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2117 14 137 ZF-HD Transcription Factor Family AT4G24660 42.941 4.31e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso5g2117 ZF-HD_dimer 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2117 - - gmx:100815758 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2117 5 44074116 44074951 Gso8g0477 8 4375369 4379454 GST
Gso5g2117 5 44074116 44074951 Gso7g0910 7 10552336 10553402 PCT
Gso5g2117 5 44074116 44074951 Gso9g1403 9 38037546 38038331 PCT
Gso7g0910 7 10552336 10553402 Gso5g2117 5 44074116 44074951 PCT
Gso9g1403 9 38037546 38038331 Gso5g2117 5 44074116 44074951 PCT