Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2109 ATGCATGCATCATGCCGCAAGTTTGTGATTCATCCTCATAACCGGGGGTGCAGGTGGTACCTGGCGTGGAAGCACTTCATTCTTATATGGGCAGTGTACTCATCCTTCTTGACTCCCATGGAGTTTGGGTTCTTCCGAGGCTTGCCCCAGAAGATTTTCCTGCTGGACATGGCGGGGCAATTGTTTTTCCTCCTTGACATCCTCCTCCGGTTCTTGGTTGGCTATCACGAGGTCCAGTCCAACTCCCTCTCCTTGGTCCTGGACCCCCACAAGATCGCCCTTAGATACCTCAAGTCTTGCTTCCTCCCCGATTTTCTCTCCTGTCTCCCCTGGGACTACTTTTACAAACTCTCCTCCAACAACGAGCTCGTCCGCTATCTTCTCTTGATAAGGCTCTGCCGTGCTTTCAGAGTCACCCAATTCTTCGACACCCTCGAGAAGAACACCCGTGTCAGTTACTTGTTCTCCCGTATCCTCAAACTCTTTGTCGTTGAACTTTATTGCACCCACACTGCCGCTTGCTTATTTTACTATCTGGCAACTACCGTGCCCCCTTCCCAACACTCTTATACCTGGATCGGTAGCTTGAAGATGGGTGACTATACTTATTCTGACTTCACTCATATTGATCTTTGGAAGCGTTACGTCACCTCCCTCTACTTCGCTATTGTTACCATGGCTACTCTTGGCTACGGAGACATCCATGCCGTCAATGTCAGGGAAATGATATTTGTCATGATTTATGTCTCCTTTGACATGATTCTCGGCGCTTACCTTCTCGGCAACATCACTGCCTTGATTGTCAAGGGATCTAAGACCGAGAGATTCAGAGATCAAATGTCTCATATTGTTAACTACATCAATAAGAACAATTTGGACAAGCAGATATGTCACCACATTAAAGATCATTTGCGCTTAAAGTATCATCCAAGTTACACCGGATCTTCTGTTCTCCAGGACATACCAACCACTATCCGCACAAAGATTTCGATTAGTTTGTATGAGCAGTTCATTCAAAAAGTTTCTCTTTTCAAGGGATGCTCTTCAGGGTTTATAAAGCAGATTGCAACCAAAGTCCAGGAAGAGTTTTTCCTCCCAGGAGAATTGGTTATGGAGCAAGGAGATGTTGTAGATCAACTCTATTTTGTATATCACGGTGAGCTGCATGAGATAAGGAAGGAAGATGATGATACAGAAGAAAATACAATTACATTGCATACCTATAGTTCTTTCGGCCAGGTTTCTTTTTTTTGCAATAAGCCTCAAACTTCCATGGTTGAAGCTCATGAATTTTGCAAGGTTTTACGACTTGATAAGAAATCCTTTACTGAAATACTGAAGATATACTTTTTAGATGGTCGTATTGTCTTGAACAATCTCCTTGAGGTAAAAGACTTGAGTCTACAACGTAAGCTTTTGGAGTCAGATTTCAACCTGACTATTGGTAACATGGAAACAGAGCTGGCAATAAGGATGAATTTTGCTGCCCATGATGGTCATCTTGATCTTGTGAAACGTTTGATTGGATTTGGGGCAGATCCCAATAAGACTGATTACGATGGCAGAACACCCTTGCATATCTCAGCATCAAAAGGATATGTAGATATTTCTTCCTATCTTGTTGAGCAAGGTGTAAATATCAACTGTGCAGATAAATTTGGCACCACTCCCTTGCTTGAAGCCATCAAGAATGGACACGAAGAAGTAGCATCTATACTTGTTAACGCAGGAGCTATCTTTACCATTGATGATGTTGGCAATTTTCTCTGCATGACTGTTGCCAAGAAGGAGTTGGACCTTTTAAAAAGGGTTCTGGGTTGTGGAGTTAATCCAAATGCCAAAAATTATGATCAACGTACACCTCTTCACATAGCTGCCTCTGAAGGTTTGTTTACAATGGCGGAAGTACTTCTAGAAGCAGGAGCGAGTGTTTTATCTAAGGACAGATGGGGAAATACACCTCTTCATGAAGCTCATACCGGTGGGGATAGAAATATGATCAAAATGCTTGAAGTGGCAAAAGCTTCTCAGTTGGTTGAGTTGTCCAATAATATTCATGAAACTCAAGGTATCTATCTTATGTTTGCAACACCAACAGATGAAATTCCGAAAAAGAGATGTATAGTATTTCCTTTCCACCCATGGGATGATCAGAAAGCGGATAGAAAAGAGGGAGTGGTCCTAACGGTTCCACAAAGCATTGAAGAGCTTATAAAGGAGGCGACAAAACATTTGGAAATTCCAAACGCTTCCTGTATTTTGTCAGAACAATGTGGCAAAATTGTTTATGTAGGCACGATTAACAATGATGAGAAGCTATTTCTAGTGAGTGAAGCACAGAATGAATGA 2349 0.424 MHASCRKFVIHPHNRGCRWYLAWKHFILIWAVYSSFLTPMEFGFFRGLPQKIFLLDMAGQLFFLLDILLRFLVGYHEVQSNSLSLVLDPHKIALRYLKSCFLPDFLSCLPWDYFYKLSSNNELVRYLLLIRLCRAFRVTQFFDTLEKNTRVSYLFSRILKLFVVELYCTHTAACLFYYLATTVPPSQHSYTWIGSLKMGDYTYSDFTHIDLWKRYVTSLYFAIVTMATLGYGDIHAVNVREMIFVMIYVSFDMILGAYLLGNITALIVKGSKTERFRDQMSHIVNYINKNNLDKQICHHIKDHLRLKYHPSYTGSSVLQDIPTTIRTKISISLYEQFIQKVSLFKGCSSGFIKQIATKVQEEFFLPGELVMEQGDVVDQLYFVYHGELHEIRKEDDDTEENTITLHTYSSFGQVSFFCNKPQTSMVEAHEFCKVLRLDKKSFTEILKIYFLDGRIVLNNLLEVKDLSLQRKLLESDFNLTIGNMETELAIRMNFAAHDGHLDLVKRLIGFGADPNKTDYDGRTPLHISASKGYVDISSYLVEQGVNINCADKFGTTPLLEAIKNGHEEVASILVNAGAIFTIDDVGNFLCMTVAKKELDLLKRVLGCGVNPNAKNYDQRTPLHIAASEGLFTMAEVLLEAGASVLSKDRWGNTPLHEAHTGGDRNMIKMLEVAKASQLVELSNNIHETQGIYLMFATPTDEIPKKRCIVFPFHPWDDQKADRKEGVVLTVPQSIEELIKEATKHLEIPNASCILSEQCGKIVYVGTINNDEKLFLVSEAQNE* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2109 782 PANTHER CHANNEL AKT1 PROTEIN, PUTATIVE-RELATED 18 774 - -
Gso5g2109 782 Pfam KHA, dimerisation domain of potassium ion channel 705 775 IPR021789 -
Gso5g2109 782 Pfam Ankyrin repeats (3 copies) 594 670 IPR002110 GO:0005515
Gso5g2109 782 Pfam Ankyrin repeats (3 copies) 494 581 IPR002110 GO:0005515
Gso5g2109 782 SMART cnmp_10 343 461 IPR000595 -
Gso5g2109 782 CDD CAP_ED 343 457 IPR000595 -
Gso5g2109 782 Pfam Cyclic nucleotide-binding domain 363 447 IPR000595 -
Gso5g2109 782 ProSiteProfiles Ankyrin repeat profile. 520 552 IPR002110 GO:0005515
Gso5g2109 782 Gene3D - 584 689 IPR036770 -
Gso5g2109 782 SUPERFAMILY cAMP-binding domain-like 271 461 IPR018490 -
Gso5g2109 782 ProSiteProfiles Ankyrin repeat profile. 492 519 IPR002110 GO:0005515
Gso5g2109 782 ProSiteProfiles cAMP/cGMP binding motif profile. 343 446 IPR000595 -
Gso5g2109 782 ProSiteProfiles Ankyrin repeat region circular profile. 520 552 - -
Gso5g2109 782 SUPERFAMILY Ankyrin repeat 442 673 IPR036770 -
Gso5g2109 782 PANTHER POTASSIUM CHANNEL AKT1 18 774 IPR045319 GO:0005249|GO:0006813
Gso5g2109 782 ProSiteProfiles KHA domain profile. 706 782 IPR021789 -
Gso5g2109 782 SMART ANK_2a 487 516 IPR002110 GO:0005515
Gso5g2109 782 SMART ANK_2a 650 679 IPR002110 GO:0005515
Gso5g2109 782 SMART ANK_2a 553 582 IPR002110 GO:0005515
Gso5g2109 782 SMART ANK_2a 520 549 IPR002110 GO:0005515
Gso5g2109 782 SMART ANK_2a 584 613 IPR002110 GO:0005515
Gso5g2109 782 SMART ANK_2a 617 646 IPR002110 GO:0005515
Gso5g2109 782 Gene3D - 485 583 IPR036770 -
Gso5g2109 782 SUPERFAMILY Voltage-gated potassium channels 18 268 - -
Gso5g2109 782 PRINTS Ankyrin repeat signature 521 536 IPR002110 GO:0005515
Gso5g2109 782 PRINTS Ankyrin repeat signature 633 647 IPR002110 GO:0005515
Gso5g2109 782 PRINTS EAG/ELK/ERG potassium channel family signature 56 66 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g2109 782 PRINTS EAG/ELK/ERG potassium channel family signature 167 177 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g2109 782 PRINTS EAG/ELK/ERG potassium channel family signature 215 232 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g2109 782 PRINTS EAG/ELK/ERG potassium channel family signature 259 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso5g2109 782 ProSiteProfiles Ankyrin repeat profile. 553 585 IPR002110 GO:0005515
Gso5g2109 782 ProSiteProfiles Ankyrin repeat profile. 617 649 IPR002110 GO:0005515
Gso5g2109 782 ProSiteProfiles Ankyrin repeat region circular profile. 553 578 - -
Gso5g2109 782 Gene3D Jelly Rolls 314 475 IPR014710 -
Gso5g2109 782 Pfam Ion transport protein 22 267 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso5g2109 782 Gene3D - 22 269 - -
Gso5g2109 782 ProSiteProfiles Ankyrin repeat region circular profile. 617 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2109 Gso-Chr5 44022637 44032206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2109 601 684 Ion Channels AT5G37500 31.132 8.62e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2109 K21867 - gmx:100798698 1579.3