Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2107 ATGCTGCCTCACAAGCACACTCTGGTGGTTGTGGCCACTGTGGCCACACTCGCGCTGGCGGCGGTGCTCGCAGCACCACAAGCAGATCTGGCCTCCGAGCGAGCTGCATTACTCTCCCTCCGTTCCTCCGTGGGAGGCCGTACCCTCTTCTGGAACGCCACCAGGGACAGCCCCTGCAACTGGGCCGGGGTCCAATGCGAGCACGGCCACGTCGTCGAGCTCCACCTCCCCGGCGTCGCTCTCTCCGGCGAAATCCCCGTCGGAATATTCGGGAATCTGACCCAGCTCCGCACCCTCAGTCTCCGTTTCAACGCCCTCAGAGGTTCCCTCCCTTCAGATCTGGCCTCCTGCGTCAACCTCCGCAACCTCTACATTCAGCGCAACTTGCTCACCGGCCAAATTCCACCCTTTTTGTTTCATTTGCCGGACCTCGTTCGCTTGAACATGGGCTTCAACAACTTCTCCGGCCCCTTTCCGTCCGCCTTCAACAACCTTACCCGTTTGAAAACTTTGTTTCTCGAAAACAACCAGCTCTCCGGCCCAATCCCCGACTTGAACAAACTCACCCTCGACCAGTTCAACGTCTCCGACAACCTCCTCAACGGCTCTGTCCCTCTTAAGCTTCAGACATTCCCTCAGGACTCTTTTCTAGGTAACTCCCTCTGTGGCCGACCACTCTCTCTCTGTCCCGGAGATGTCGCCGATCCCCTCTCGGTCGACAACAACGCCAAGGGCAACAACAACGACAACAAGAAGAACAAGCTGTCCGGGGGCGCCATAGCGGGGATTGTTGTCGGATCGGTGGTGTTTCTTCTCTTGCTTGTGTTCCTCTTGATTTTCCTGTGCAGGAACAAGAGTGCCAAGAATACCAGCGCGGTCGACATTGCCACTGTCAAACATCCTGAGACGGAGTCTGAGGTTCTTGCCGACAAGGGTGTCTCCGATGTCGAGAACGGTGGTCATGCCAATGTCAACCCTGCAATCGCTTCTGTGGCGGCGGTTGCGGCTGGGAATGGTGGTAGCAAGGCGGAAGGGAACGCGAAGAAGTTGGTGTTTTTTGGGAATGCGGCGAGGGCGTTTGATTTGGAAGATTTGCTCAGGGCTTCGGCGGAGGTTTTGGGGAAAGGGACTTTCGGGACGGCGTACAAGGCGGTGTTGGAGGCGGGGCCGGTGGTGGCCGTGAAGAGGTTGAAGGATGTGACAATTTCCGAGAAGGAATTTAAGGAGAAGATTGAGGCGGTGGGAGCGATGGATCACGAGAGTTTGGTGCCTCTCAGGGCTTACTATTTCAGCAGGGATGAGAAGCTCCTTGTCTATGATTATATGCCCATGGGAAGCTTGTCTGCCCTTTTACATGGAAACAAAGGAGCTGGTAGGACACCACTGAATTGGGAAGTGAGATCAGGCATTGCACTTGGAGCTGCCCGTGGCATTGAGTACCTACATTCACGAGGGCCTAATGTTTCTCATGGAAATATCAAGTCATCAAACATCCTCTTAACCAAATCATATGATGCCAGAGTGTCTGACTTTGGCCTTGCACACCTTGTTGGCCCCTCCTCTACCCCTAACCGTGTGGCCGGCTACCGTGCGCCGGAGGTGACTGATCCTCGCAAGGTGTCTCAGATGGCAGATGTGTACAGCTTTGGTGTGTTGCTCTTGGAACTTCTGACTGGGAAGGCACCTACCCATGCTCTCCTGAATGAGGAAGGAGTGGACCTCCCCAGATGGGTTCAATCCGTGGTTAGAGAAGAGTGGACTTCTGAGGTCTTTGATCTTGAGCTCCTTAGGTATCAAAATGTAGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACAATACCCTGACAAGCGCCCTTCAATGTCTGAAGTGGTAAGGAGCATACAAGAGTTGCGAAGGTCTAGCTTGAAAGAGGACCAGGACCAAATCCAACATGACAATGATATACTATTATAG 1971 0.5408 MLPHKHTLVVVATVATLALAAVLAAPQADLASERAALLSLRSSVGGRTLFWNATRDSPCNWAGVQCEHGHVVELHLPGVALSGEIPVGIFGNLTQLRTLSLRFNALRGSLPSDLASCVNLRNLYIQRNLLTGQIPPFLFHLPDLVRLNMGFNNFSGPFPSAFNNLTRLKTLFLENNQLSGPIPDLNKLTLDQFNVSDNLLNGSVPLKLQTFPQDSFLGNSLCGRPLSLCPGDVADPLSVDNNAKGNNNDNKKNKLSGGAIAGIVVGSVVFLLLLVFLLIFLCRNKSAKNTSAVDIATVKHPETESEVLADKGVSDVENGGHANVNPAIASVAAVAAGNGGSKAEGNAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIEAVGAMDHESLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEVRSGIALGAARGIEYLHSRGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQMADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPSMSEVVRSIQELRRSSLKEDQDQIQHDNDILL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2107 656 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Gso5g2107 656 Gene3D Transferase(Phosphotransferase) domain 1 442 655 - -
Gso5g2107 656 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Gso5g2107 656 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Gso5g2107 656 SUPERFAMILY Protein kinase-like (PK-like) 371 635 IPR011009 -
Gso5g2107 656 Pfam Protein kinase domain 370 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g2107 656 Gene3D Ribonuclease Inhibitor 144 229 IPR032675 -
Gso5g2107 656 Gene3D Phosphorylase Kinase; domain 1 334 441 - -
Gso5g2107 656 Gene3D Ribonuclease Inhibitor 32 141 IPR032675 -
Gso5g2107 656 ProSiteProfiles Leucine-rich repeat profile. 167 189 IPR001611 GO:0005515
Gso5g2107 656 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 651 - -
Gso5g2107 656 PANTHER OS05G0588300 PROTEIN 2 651 - -
Gso5g2107 656 SUPERFAMILY L domain-like 48 208 - -
Gso5g2107 656 CDD STKc_IRAK 373 636 - -
Gso5g2107 656 ProSiteProfiles Protein kinase domain profile. 367 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2107 Gso-Chr5 44005957 44008642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2107 29 637 Receptor kinase-like Gene Family AT1G48480 66.023 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gso5g2107 Pkinase 1.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2107 - - gmx:100818955 1178.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2107 5 44005957 44008642 Gso8g0468 8 4318309 4321298 GST
Gso5g2107 5 44005957 44008642 Gso7g0878 7 10019317 10022526 PCT
Gso5g2107 5 44005957 44008642 Gso9g1427 9 38334336 38337548 PCT
Gso7g0878 7 10019317 10022526 Gso5g2107 5 44005957 44008642 PCT
Gso9g1427 9 38334336 38337548 Gso5g2107 5 44005957 44008642 PCT