Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2095 ATGTGGATGGTTGGTTACAATGAAGGAGGCGAGTTCAACATGGCTGATTATGGATTCAATGGGAGGAAACTCAGGCCTCTCATGCCAAGGCCAGTGACATCTCCTAACAACACTTCAAACACAAACTCTCCATGCTTGAGCCGCATTCATCATGGCAACAATTTCTTTTCACAATATCACAATCTGGATCAGGGAAAGAGGGAGTTCAACCCTCCACCAGTAGTGGTGAGTTCAAGGTGGAATCCAACCCCGGAGCAACTGAGAGCATTGGAGGAATTGTATAGAAGAGGGACAAGAACACCATCTGCGGAGCAAATCCAACAAATCACGGCACAGCTTAGGAGGTTTGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCAAGAGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCTGCTGAGGGTCATCACACCCGTGACTTTGATAGTACTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGATCAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATACAAAGGGCAGCAAAAGCAGCGATTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAACATAGAAGAAACTTTATGGAGAGGAATGCCACGTGGCATATGATGCAGTTATCTTGTCCTCCCCCTCCTACAGTTTCACCCCACCTCATAAACACATCTCCTATTACCTCTACTACTAGCATGGCCACCGCAACCACAGTAACAGCAAGACTAATGGACCCAAAGCTCATTAAGACTCATGATCTCAGCTTCTTTACTTCACCTAACAGAGAAAACGGTATTATCCACTTAAGCAGTATCAGCACCCAGGATGATAATTCTGTGGAATCTCAAACCCTTCAACTTTTTCCAACAAGGAACGCGGATCGAAGCAGTGATAACATCAACCAGCAAAAAGAGACAGAGGTTTCGGTTTCAGCGATGAATGCACCCAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1068 0.4494 MWMVGYNEGGEFNMADYGFNGRKLRPLMPRPVTSPNNTSNTNSPCLSRIHHGNNFFSQYHNLDQGKREFNPPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDSTLEKKDLGASRTVFEVDQTKNWAPSTNCSTLAEESVSIQRAAKAAIAECRTDGWLQFDEGELQHRRNFMERNATWHMMQLSCPPPPTVSPHLINTSPITSTTSMATATTVTARLMDPKLIKTHDLSFFTSPNRENGIIHLSSISTQDDNSVESQTLQLFPTRNADRSSDNINQQKETEVSVSAMNAPSQFFEFLPLKN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2095 355 Pfam Homeodomain 78 137 IPR001356 GO:0003677
Gso5g2095 355 ProSiteProfiles 'Homeobox' domain profile. 83 138 IPR001356 GO:0003677
Gso5g2095 355 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 31 355 IPR044555 GO:0003700|GO:0099402
Gso5g2095 355 CDD homeodomain 79 139 IPR001356 GO:0003677
Gso5g2095 355 MobiDBLite consensus disorder prediction 139 156 - -
Gso5g2095 355 MobiDBLite consensus disorder prediction 136 156 - -
Gso5g2095 355 SMART HOX_1 75 142 IPR001356 GO:0003677
Gso5g2095 355 Gene3D - 76 138 - -
Gso5g2095 355 PANTHER WUSCHEL, PUTATIVE-RELATED 31 355 - -
Gso5g2095 355 SUPERFAMILY Homeodomain-like 78 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2095 Gso-Chr5 43909623 43912795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2095 1 355 Wox Gene Family AT3G18010 41.039 1.18e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso5g2095 Homeodomain 9.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2095 - - gmx:100777274 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2095 5 43909623 43912795 Gso8g0451 8 4197017 4200084 GST