Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2092 ATGGCCATCTCCTTCAGTCCCAAACACCCTCCTTACGATGAGATGATATACACAGCAATCGGAGCTCTGAAGGAGAGGGATGGTTCGAGCAAGCGAGCCATAGGAAAGTACATAGAACAAGTCTACAAGGACCTTCCACCCACTCACCCTGCTTTGTTGACTCACCATCTCAACCGATTGAAATCCTCTGCCCTCCTCGTCCTCGTCAAGAAATCCTACAAGCTTCCTGGATCTCATCATCTGCCTGCGCTCCAGCCCCAAAAGACCCGTGGTCGTCCCCCCAAGCCCAAGCCCCACCCCGTCTGGCCTGCTGCAGCCCTCACCGACAGCCCTGCTCTTCTATCCGCCAAAAGAGGCCCCGGTCGTCCTAAAAAGATTGGTGTCAGCCCGCCAGGCCCAAGGGGTCGTCCACCCGGGACTGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCCCCCAAGCCCAAATCCGTGTCGGCGATCTCCAGTGGTCTCAAACGACGTCCTGGACGCCCACCCAAAGCCCAATCCAACGTAAACGTCATCCCCTTCGCAGCCCCAGTTGCTCCCGGCCTGCCTACTGTGCAGCCCATCCTTCCTACTGCTTCCGTGCCCAATGGATCTCCCAGGCCCCGAGGAAGGCCTAAAAAGAGTTTTACTGCTGCGGGGGCTCCGGCGCTATCTGCCGTTGCCGGTGCAGCGCGTGGTCGTGGCCGCGGACGTCCACGTGGGGTCTTCCCGGTGGTTAGGCCCGGCCGGCCTCAGAAGCTCGCCGTAGGAAGGTCCAAGAATCCTGTAAGAAGGCCCGTGGGCCGCCCCAAGGGATCGACAGCTGCTGCAATCACAGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAATCAAAAGTGAAGGAGTCCCTTGGCACGCTTAAGCCTTATTTTAACCATGAAAGCCCAGTCACTGCAATTGCGGCAATTCAAGAGTTGGAAGTACTGTCAACTTTGGACCTTAAAGCGCCATTGAGGGATGAGACCCAGCAACAGCCACCGCCACAGCCACTGCCACAGACACAGACACAGGTGTATGAACAGCAATATCCCCAGCCACAGTCACAGCAGCTGCCGCAATTTTTTCAACCACATACATCAGCCCCGAGCTAG 1158 0.5699 MAISFSPKHPPYDEMIYTAIGALKERDGSSKRAIGKYIEQVYKDLPPTHPALLTHHLNRLKSSALLVLVKKSYKLPGSHHLPALQPQKTRGRPPKPKPHPVWPAAALTDSPALLSAKRGPGRPKKIGVSPPGPRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAQSNVNVIPFAAPVAPGLPTVQPILPTASVPNGSPRPRGRPKKSFTAAGAPALSAVAGAARGRGRGRPRGVFPVVRPGRPQKLAVGRSKNPVRRPVGRPKGSTAAAITAHKAANEDLRKKLEHFQSKVKESLGTLKPYFNHESPVTAIAAIQELEVLSTLDLKAPLRDETQQQPPPQPLPQTQTQVYEQQYPQPQSQQLPQFFQPHTSAPS* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2092 385 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 8 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso5g2092 385 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Gso5g2092 385 PRINTS AT-hook-like domain signature 129 140 IPR017956 GO:0003677
Gso5g2092 385 PRINTS AT-hook-like domain signature 207 217 IPR017956 GO:0003677
Gso5g2092 385 MobiDBLite consensus disorder prediction 339 385 - -
Gso5g2092 385 PANTHER HISTONE H1-LIKE 6 244 - -
Gso5g2092 385 PANTHER HISTONE H1-LIKE 249 351 - -
Gso5g2092 385 MobiDBLite consensus disorder prediction 77 222 - -
Gso5g2092 385 PANTHER HISTONE H1 249 351 - -
Gso5g2092 385 PANTHER HISTONE H1 6 244 - -
Gso5g2092 385 SMART AT_hook_2 166 178 IPR017956 GO:0003677
Gso5g2092 385 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Gso5g2092 385 SMART AT_hook_2 131 143 IPR017956 GO:0003677
Gso5g2092 385 SMART AT_hook_2 267 279 IPR017956 GO:0003677
Gso5g2092 385 SMART AT_hook_2 117 129 IPR017956 GO:0003677
Gso5g2092 385 SMART AT_hook_2 209 221 IPR017956 GO:0003677
Gso5g2092 385 SMART AT_hook_2 236 248 IPR017956 GO:0003677
Gso5g2092 385 MobiDBLite consensus disorder prediction 356 385 - -
Gso5g2092 385 Coils Coil 281 301 - -
Gso5g2092 385 CDD H15 6 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso5g2092 385 SMART h15plus2 6 72 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso5g2092 385 SUPERFAMILY "Winged helix" DNA-binding domain 7 82 IPR036390 -
Gso5g2092 385 Pfam linker histone H1 and H5 family 9 70 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso5g2092 385 Gene3D - 5 89 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2092 Gso-Chr5 43881292 43884574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2092 13 78 Single Myb Histone (SMH) Gene Family AT1G49950 43.939 4.55e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2092 - - gsj:114413727 603.594