Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2089 ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGTGATTATGATGAGGAGGTTGATACCACGGTGGGTGAATCTGGTAGTCAAGCAGTGACAAGCAGGTACCTGCAGGATAATGCAAGTGACAGTGATGACTCTGATGGCCAAAAGCGCATTGTGAGGTCAGCAAAGGATAAACGTTTCGAGGAGATGGCTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAATGACTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAGGTCATGCGTGTCACTGAGTCTGAGAAGGTCCCCAATCTTTACATCAAGGCACTCGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGCAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATAATAAGCAGTATGAGGACTTGATTAATAAGTGCAGGGAGAACCCTGAGAGCGAGGAGGAAAAAGAAGAGGAGAGCGAGGAAGAGTATGACAGTGATGGTGAGATTATTGATCCAGATCAGCTTCAAAAACCAGAAGCAAAATCCGATTCGGAGGCCTCTCAATATGAAGATGAAAAGCCAGATGCTGGTGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTGGATAGACAGTTCATGAAAAACCCTAGTGAGATCACGTGGGACGCGGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCCAGGGGAAGAAAGGGAACTGGTAGGTTCGAACAGGTTGAGCAGCTCACTTTCTTAACAAAAGTTGCTAAGACACCTGCACAGAAGTTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCGGGCCTCAATGGGCATGTGCCCATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTGCAGTACCCAAATATAGTGGCTGATGATTTGGTTGAACCTGACGAGAATGAAACTCAGAAAGGTCCTGAACATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTTTTAGAAAGAATTGATGTCGAGTTTTTCAAGAGCCTGCAGTGCACAGATCCTCATACACGTGACTATGTTGAGAGACTTAGGGATGAGCCCACGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGACTGAATTGACAGAAGATGGAGATAATGGAGGGGAGGCAAGTGAGAAGGAATTTGAGGAATCAAGAATTCCTACTGCATTTGTTGTTACCCCAGAGGTTGTTGCGCGGAAACCCACCTTCCCTGAGAATAGCAGGACCCTAATGGATGTATTGGTATCTATGATATACAAATATGGAGATGAGCGAACTAAAGCGCGTGCAATGCTCTGTGATATATATCATCATGCTCTACTTGATGAGTTCTCAACAGCCCGTGATCTGCTTCTTATGAGCCATTTGCAAGATAGTGTTCAGCATATGGACATTTCAACGCAGATACTTTTTAACAGGGCCATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTTTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGCGTGTCACAAAGTCGTTATCACGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGACAGATGCCCTATCATATGCACATCAATCTAGAGCTCCTGGAGGCAGTACATCTTGTTTCTGCTATGCTGCTGGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAGACTTTCCGTCGCCTGCTTGAGGTAAGTGAGAAACAAACATTTACTGGTCCACCGGAAAATGTCAGAGATCACGTTATGGCTGCCACAAGGGTTCTTAACAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGATGTGTGGAAATTTGTGAGAAATCGAGATACCGTACTTGAAATGCTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCATCTTATGAATCGTTGAGCCTGGATCAACTCACAAAATTTTTTGATCTCTCTGTTTGTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGATCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCCAGGCTTCAGGCATTGGCATTCCAATTGACCGAGAAATTATCTGTCCTTGCAGAGAGTAATGAAAAAGCAGCAGAGGCCAGGGTAGGTGGTGGTGGATTGGATCTGCCTCTAAGGCGTAGAGATGGCCAGGACTATGCTGCCGCCGCGGCTGCCGGCAGTGGTACAGCCTCTTCCAGTGGTAGGTGGCAAGACCTGTCCCTTTCTCAGCCAAGGCAAGGCAGTGGGCGTGCAGGGTATGGTGGAAGGCCAATGGCATTGGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAAGGGGTTCGTATGGAGGTTCAGGGAGGACTGCTCAAAGGGGTTCAGCATTGAGGGGACCCCAGGGAGATGGATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCCTGA 2778 0.4597 MASRFWTQGGSDSEEEESDYDEEVDTTVGESGSQAVTSRYLQDNASDSDDSDGQKRIVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRENPESEEEKEEESEEEYDSDGEIIDPDQLQKPEAKSDSEASQYEDEKPDAGEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHVPINVWKKCVQNMLIILDILVQYPNIVADDLVEPDENETQKGPEHNGTIRVWGNLVAFLERIDVEFFKSLQCTDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQEVYDAMRKLTELTEDGDNGGEASEKEFEESRIPTAFVVTPEVVARKPTFPENSRTLMDVLVSMIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLNKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFDLSVCRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSVLAESNEKAAEARVGGGGLDLPLRRRDGQDYAAAAAAGSGTASSSGRWQDLSLSQPRQGSGRAGYGGRPMALGQAAGSGYSRGRGRGSYGGSGRTAQRGSALRGPQGDGSTRMVSLKGVRA* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2089 925 Pfam PCI domain 657 785 IPR000717 -
Gso5g2089 925 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 868 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso5g2089 925 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 924 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso5g2089 925 SMART PINT_4 718 806 IPR000717 -
Gso5g2089 925 MobiDBLite consensus disorder prediction 134 228 - -
Gso5g2089 925 MobiDBLite consensus disorder prediction 193 228 - -
Gso5g2089 925 MobiDBLite consensus disorder prediction 838 925 - -
Gso5g2089 925 SUPERFAMILY "Winged helix" DNA-binding domain 713 788 IPR036390 -
Gso5g2089 925 MobiDBLite consensus disorder prediction 12 26 - -
Gso5g2089 925 ProSiteProfiles PCI domain profile. 617 789 IPR000717 -
Gso5g2089 925 MobiDBLite consensus disorder prediction 155 174 - -
Gso5g2089 925 MobiDBLite consensus disorder prediction 135 154 - -
Gso5g2089 925 MobiDBLite consensus disorder prediction 45 63 - -
Gso5g2089 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 924 - -
Gso5g2089 925 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 718 806 - -
Gso5g2089 925 MobiDBLite consensus disorder prediction 1 63 - -
Gso5g2089 925 MobiDBLite consensus disorder prediction 842 863 - -
Gso5g2089 925 Coils Coil 144 171 - -
Gso5g2089 925 MobiDBLite consensus disorder prediction 175 192 - -
Gso5g2089 925 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 649 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Gso5g2089 925 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2089 Gso-Chr5 43839510 43843856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2089 1 925 Eukaryotic Initiation Factors Gene Family AT3G56150 68.617 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2089 K03252 - gmx:100779751 1726.45