Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2075 ATGGATATTGAGGAGGACATCCGTTCTTTACAGCTCGATTCAGCAGAAGACAATAATGGGGTGGTAAATGCAGAGGATGGAAGGCCAGAAGAAGTTGAGAAATCTGATAAGATGGATGAAGATCCAAAGCAGGATGTTGAGGCTGAGCCAAAGGCTGTTGAGGCTGAGCCAAAAGTGAAGGATAAGGAGGTTCCTTCTGTTACAGATGAAGAAGATGAACCAGAGATGACAAAAAGACACTTGAATGTTGTGTTTATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTTAGTGGTCAAGTTGATGAGCGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACGAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAAACAACAAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAACATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGTCTAAGCTTCTTGTTGTCGTCAATAAAATGGATGAGCCTACAGTGCAATGGTCGAAAGAAAGGTATGATGAAATTGAGTCGAAGATGGTTCCATTTTTAAAGCAATCTGGATACAACGTAAAAAAAGATGTCTTGTTTTTACCAATATCTGGTCTAATGGGTGCAAACATGAAAACAAGAGTGGATAAAAGCGTTTGTCCATGGTGGAATGGACCTTGCTTATTTGAGGCACTTGACGCTATTGAAGTTCCACTGCGAGATCCCAACGGTCCTTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGCAGTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCCAGTGAAAGTTGTTGCCATATTTATTGATGAAGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTGTCTGGGTTTGTTCTATCTAGTGTTGCTAATCCAATACCAGCAGTTACCGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGCGAGATTGTTGAACTCTTGCAGCAAATCGATACAAAGACAAAGAAGCCTATGAAAAAGAAAGTTTTGTTTGTGAAGAATGGAGCTGTTGTAGTGTGCCGTGTTCAGGTTAATAACTCTATTTGCATCGAGAAGTTCTCTGATTTTCCCCAGCTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTCACTGGTCTGTGA 1515 0.4185 MDIEEDIRSLQLDSAEDNNGVVNAEDGRPEEVEKSDKMDEDPKQDVEAEPKAVEAEPKVKDKEVPSVTDEEDEPEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGANMKTRVDKSVCPWWNGPCLFEALDAIEVPLRDPNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDPVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDILSGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTKKPMKKKVLFVKNGAVVVCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2075 504 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 398 503 IPR009001 -
Gso5g2075 504 CDD EF1_alpha 82 302 - -
Gso5g2075 504 PANTHER BNAA06G12300D PROTEIN 73 498 - -
Gso5g2075 504 MobiDBLite consensus disorder prediction 23 75 - -
Gso5g2075 504 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 78 304 IPR000795 GO:0003924|GO:0005525
Gso5g2075 504 MobiDBLite consensus disorder prediction 1 75 - -
Gso5g2075 504 Pfam Elongation factor Tu C-terminal domain 395 503 IPR004160 -
Gso5g2075 504 SUPERFAMILY Translation proteins 301 394 IPR009000 -
Gso5g2075 504 Pfam Elongation factor Tu domain 2 322 388 IPR004161 GO:0005525
Gso5g2075 504 Gene3D - 59 302 IPR027417 -
Gso5g2075 504 PANTHER TRANSLATION FACTOR 73 498 - -
Gso5g2075 504 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 134 149 IPR031157 -
Gso5g2075 504 CDD eRF3_C_III 396 504 - -
Gso5g2075 504 PRINTS GTP-binding elongation factor signature 82 95 IPR000795 GO:0003924|GO:0005525
Gso5g2075 504 PRINTS GTP-binding elongation factor signature 161 171 IPR000795 GO:0003924|GO:0005525
Gso5g2075 504 PRINTS GTP-binding elongation factor signature 177 188 IPR000795 GO:0003924|GO:0005525
Gso5g2075 504 PRINTS GTP-binding elongation factor signature 221 230 IPR000795 GO:0003924|GO:0005525
Gso5g2075 504 Pfam Elongation factor Tu GTP binding domain 78 291 IPR000795 GO:0003924|GO:0005525
Gso5g2075 504 Gene3D Translation factors 397 504 - -
Gso5g2075 504 Gene3D Translation factors 307 392 - -
Gso5g2075 504 CDD eRF3_II 309 390 - -
Gso5g2075 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2075 Gso-Chr5 43725931 43734577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2075 78 499 Eukaryotic Initiation Factors Gene Family AT5G60390 38.118 1.91e-97 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2075 K03267 - gmx:100784412 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2075 5 43725931 43734577 Gso8g0431 8 4017440 4028732 GST