Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2064 ATGCCTGTCACAAACACAACAACACCTACAGTGGCAGAACACATCAAATGGAGAAGGCCCAGAAACCAATTCAACCACCACCATCATCACCATCACCACCCCATTTCAGAAACAGATCCAAACCCTCAAATCCCTTCCATAATCCAATCCACTAGGTGCAAGTCCACCATTTCCTCCCTGCTCCTCTCCACTTTCTCCAACAACACCTCCAATAATGCCACTGCCCACAGCAAGAAAAAAAGCAACTTTTCTGCATCAACCTTCAGAGGGTTGGGCTGCACTGCTGGCTCGTCGCAGCAGGTGTCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAAAAGAAGCACAAGAGAAGCAACAGAAGCAGCAAGAACAAGACTTTCCATGGTGGGGTTCTGGAAGGTTCCAATCCAGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACAGATGCTGCTGCCTCTGTTGATTGTGTTGTGGCCAGGAAGAATGTCTCTTCTGCAAGAGGGAAAATTGATGTGGATAAGATCACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACAGAGACCTTCACTTTTCTGGACAGTACTGATCCTGACATTTTCACACCACGCTCTGCGTCTGACACTTATGGAACTGCTACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGCTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCATTTCAGAGACTGGAGACTGGATGTTGATAACATGTCCTATGAGCAATTGCTAGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTCAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGATTCAATTTTGGGATGATACATCAAAGCTTCAAGTAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCGGGTGATGAGTTGGGGAGGCTAAATTGTGAGCACAGTTATCACTTTCAGTGTATAAAACAATGGGTTGCACAAAAAAATTTCTGCCCAGTATGTAAGCAACAAGTTGCGGCTCGACACTGA 1116 0.4642 MPVTNTTTPTVAEHIKWRRPRNQFNHHHHHHHHPISETDPNPQIPSIIQSTRCKSTISSLLLSTFSNNTSNNATAHSKKKSNFSASTFRGLGCTAGSSQQVSVPAVIRSSADWQGKKTRKKKHKRSNRSSKNKTFHGGVLEGSNPGCVDFQDVWCGPGIGFSTDAAASVDCVVARKNVSSARGKIDVDKITHRERSSYVGRRTETFTFLDSTDPDIFTPRSASDTYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDHFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKTRIQFWDDTSKLQVDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVAQKNFCPVCKQQVAARH* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2064 371 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Gso5g2064 371 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 6 371 - -
Gso5g2064 371 Pfam Ring finger domain 321 364 IPR001841 -
Gso5g2064 371 MobiDBLite consensus disorder prediction 108 138 - -
Gso5g2064 371 SUPERFAMILY RING/U-box 313 368 - -
Gso5g2064 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 371 IPR045191 GO:0061630
Gso5g2064 371 SMART ring_2 323 363 IPR001841 -
Gso5g2064 371 MobiDBLite consensus disorder prediction 115 131 - -
Gso5g2064 371 CDD RING-H2_PA-TM-RING 322 364 - -
Gso5g2064 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 369 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2064 Gso-Chr5 43628955 43632830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2064 11 278 C3H Transcription Factor Family AT1G73760 42.907 2.76e-53 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2064 - - gmx:100788837 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2064 5 43628955 43632830 Gso8g0419 8 3894122 3898804 GST