Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2063 ATGGGGAAGAAGAAGAAGAGAGTTTCCTCGAAGGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTTCACAAGGAATCCGTCACTAAGGTGCCCAATGCAAAGCCTGGTAGAGAGAGTACGGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCCTGGCTGCTCATTATGGTGAAGAAGAGGATGATGTTCCATCAAAGGCAGCCAAAGTGGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGTACAGGATATCCTTCGCGACCAGCCTTGCCCACGATGCCACCAGTTTATAATCCAGCTGTACCTGTGCCTCCAAATGCTTGGGTGGTTCCACCTCGACCTCAGCCATGGTTTTCACAGCCTCCAGTTGTTTCAGTTCCTCCTGCTGCCCCATACACACAGCAGCCATTATTCCCTGTGCAGAACGTGAGGCCTCCACTGCCAGCAACTGCTCCTGCCCTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTGCACCTGTCCCAGTTTCGCAACCTTTATTTCCTGTTGTTGGAAATAACCATACAACTACTCAAAGTTCTGCATTTTCTGCTCCACCCCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTTCCTGTTGATACACATTTGAGCAGCAACTCTTCAGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGGTGGAGCAGCTAGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCCACCAACGAAGTCTACTTGGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCAGCCATAGATAAGAGGATACTTGAGAGCAGGCTGGCTGGTCGTATGGCATTTTAG 1116 0.4892 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMIPPPLGTGYPSRPALPTMPPVYNPAVPVPPNAWVVPPRPQPWFSQPPVVSVPPAAPYTQQPLFPVQNVRPPLPATAPALQTQITPPGLPTSAPVPVSQPLFPVVGNNHTTTQSSAFSAPPLPSSVPSVTPVMSTNVPVDTHLSSNSSVTSSYQAIGVPGGAASNSHSYASGPNTGGPSIGPPPVIANKAPAPQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2063 371 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Gso5g2063 371 Gene3D Classic Zinc Finger 1 66 - -
Gso5g2063 371 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Gso5g2063 371 SMART c2h2final6 12 35 IPR013087 -
Gso5g2063 371 SMART c2h2final6 36 59 IPR013087 -
Gso5g2063 371 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Gso5g2063 371 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 371 - -
Gso5g2063 371 PANTHER ZINC FINGER PROTEIN 207 1 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2063 Gso-Chr5 43620721 43624143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2063 1 351 C2H2 Transcription Factor Family AT1G30970 63.736 2.87e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g2063 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2063 - - gmx:100789368 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2063 5 43620721 43624143 Gso8g0418 8 3883682 3887006 GST