Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2062 ATGATGCCGTACATGGAGTTTTGTTTCTGTGACCTTTTTCTTCCAACCATCAGAGAAAAGTATGATGAATCGGGCAGAAAGATAGGGAGGGGCAGAGAGAAATTGTTGGTGATGGGTCTTGGTTTGAAGATGAAGAGCCTGAGGCACCACCCCATGGCCTTGAAGTTACATGAGCAAGCGGGGAGCATAAGAAAGTACACTTTCATTCAGGCACATAGGGCATGGCTGCCCAAGTTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGCTGTTTCATCTATAGTAAAATGGATGCTGACACTAAGGTTAGAAGGAAAGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTCAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACCCCTTCTGCCATTGACCAGGAAACCTTTGCAGAGTATACAGCCCGGACAGCATTTGAACGACCATTACTCAGTGGGGTGGCCTATGCACAAAGAGTAGTTAACTCAGAGAGGGGAACATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACTGGTTAGAGATGAGTATGCACCGGTGATATTTGCGCAAGAAACACTCTCTTACCTCGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGTCCTTTCAATCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTATAAATCTAAGCTCCCTCCAAAGCCGACAATGGAAGAGCGCATTAAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTCACCAAGCAATTTTGGTGAACGTATATGATATCACAAATTCTACTAACCCCTTAATCATGTATGGCAACCAAAACGAAGAAGGTGATATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAACCATACAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCACTTACCACGGCATTCTTATTCTTTGTGATTCTTTTATTAGTGGGTTATATTTTATATGGTGCTGGAAATCACATTGTCAAAGTAGAGGATGATTTTCATCAAATGGAGGAATTAAAAGTCCGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATCAGAACACCCATGAATGGCATTCTAGGAATGCTTGGTCTGCTTCTAAAGACAGAATTGAGTTCAACTCAACGAGATTATGCCCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCCTTAATAAATGAGGTACTTGACCGGGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCCAGGAACAAAGGTTTAGAGCTGGCGGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTGAAAGTCCATCTATCTGAAAATAGTATGTCCACAATGAATGGAAAAACTGAGAAATTTATAAACAGAGGATCAGGCGAACCTGTGCATATGTCTGGTGCTTATAATTCCAAAACTTTAAGTGGATATGAAGCAGCTGATGAGCGGAACAGCTGGGACAATTTTAAGCATCTAATTGCTGATGAAGAATTTTTCTTTGATGCTTCTGTTAAAAAGGCAGCCAGTGAATCTTATGAGCAAGTCACCTTGATGGTCAGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGACATTATGGTGGTACTGGCATTGGCTTGAGTATCAGTAAATGCCTGGTTGAACTAATGGGTGGTGAGATAAGTTTCATAAGCCAACTGCAGGTTGGCAGCACATTTTCATTTACTGCAGGTTTTGGAACGATTGAGAAAAATGCAATAACTGACATGAAGAAACATAATTTGGAAGATCTGCCTTCCAATTTTAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCAGCAGTGACTAGATACCATCTGAAGAGACTAGGGATACAAGCTAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCGGGATTATTTCAGCCCGATATTATTTTTGTTGAGAAAGATTCATGGGTTTGTGGAGAGGACGAGATCTTCAATGTGTGGCAACTGGACTGGAAACAAAATGGGCATATGTTTAAGATACCTCAAATGATCCTTCTTGCGACCAACATCGGTAATGCTGAATTTGATAAAGCTAAAGCTGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTAAGAGCTAGCATGGTGGCTGCTTGTCTTCAGCAAGTTCTTGGAACAGGGAAGAAGAGGCAGCATGGGAAAGACATGAAGCCTAATGGTTCCACTTTGGTACGAAGCCTTCTTTGTGGGAAAAAAATCTTAGTGGTTGATGACAATGTGGTAAACCGGAGGGTCGCTGCAGGTGCATTAAAAAATTTTGGAGCTGATGTGACGTGTGCAGAAAGTGGCAAAACTGCTCTTGAAATGCTGCAGTTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTCAAGCAACTCAGCGAATTCGGATGATGGAGACAAAGGCAAATGAGCAGCAGATGAATGGTGAAGGAAATGGGTGGAAAGACAAGTACCATATACCTATATTGGCCATGACAGCTGATGTAATTCACGCCACATATGATGAGTGCGTGAAATATGGGATGGATGGATACGTCTCAAAGCCTTTTGAGGAAGAAAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCCAAGCCTACCACAGACAACAGCCTAATAGAAAATGGCAGAACTTGA 3147 0.4236 MMPYMEFCFCDLFLPTIREKYDESGRKIGRGREKLLVMGLGLKMKSLRHHPMALKLHEQAGSIRKYTFIQAHRAWLPKFLMLWILLMALIGCFIYSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERGTFEKQHGWVIKTMEREPSLVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFNLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTNPLIMYGNQNEEGDMSLVHESKLDFGDPYRNHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHQMEELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLKTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRNKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENSMSTMNGKTEKFINRGSGEPVHMSGAYNSKTLSGYEAADERNSWDNFKHLIADEEFFFDASVKKAASESYEQVTLMVSVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQLQVGSTFSFTAGFGTIEKNAITDMKKHNLEDLPSNFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNGSLTSGLFQPDIIFVEKDSWVCGEDEIFNVWQLDWKQNGHMFKIPQMILLATNIGNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGKDMKPNGSTLVRSLLCGKKILVVDDNVVNRRVAAGALKNFGADVTCAESGKTALEMLQLPHNFDACFMDIQMPEMDGFQATQRIRMMETKANEQQMNGEGNGWKDKYHIPILAMTADVIHATYDECVKYGMDGYVSKPFEEENLYQAVAKFFNPKPTTDNSLIENGRT* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2062 1048 CDD REC_hyHK_CKI1_RcsC-like 900 1028 - -
Gso5g2062 1048 CDD HisKA 420 481 IPR003661 GO:0000155|GO:0007165
Gso5g2062 1048 Gene3D - 98 150 - -
Gso5g2062 1048 SMART CHASE_2 147 332 IPR006189 -
Gso5g2062 1048 SMART REC_2 898 1028 IPR001789 GO:0000160
Gso5g2062 1048 Pfam His Kinase A (phospho-acceptor) domain 420 485 IPR003661 GO:0000155|GO:0007165
Gso5g2062 1048 Gene3D - 893 1038 - -
Gso5g2062 1048 Gene3D - 734 876 - -
Gso5g2062 1048 ProSiteProfiles Response regulatory domain profile. 899 1032 IPR001789 GO:0000160
Gso5g2062 1048 ProSiteProfiles Response regulatory domain profile. 741 871 IPR001789 GO:0000160
Gso5g2062 1048 Pfam CHASE domain 150 330 IPR006189 -
Gso5g2062 1048 ProSiteProfiles Histidine kinase domain profile. 427 716 IPR005467 -
Gso5g2062 1048 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 407 486 IPR036097 GO:0000155|GO:0007165
Gso5g2062 1048 ProSiteProfiles CHASE domain profile. 147 359 IPR006189 -
Gso5g2062 1048 PRINTS Bacterial sensor protein C-terminal signature 641 655 IPR004358 GO:0016310|GO:0016772
Gso5g2062 1048 PRINTS Bacterial sensor protein C-terminal signature 659 669 IPR004358 GO:0016310|GO:0016772
Gso5g2062 1048 PRINTS Bacterial sensor protein C-terminal signature 676 694 IPR004358 GO:0016310|GO:0016772
Gso5g2062 1048 SUPERFAMILY CheY-like 736 872 IPR011006 -
Gso5g2062 1048 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 532 712 IPR003594 -
Gso5g2062 1048 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 474 711 IPR036890 -
Gso5g2062 1048 CDD HATPase_EvgS-ArcB-TorS-like 537 712 - -
Gso5g2062 1048 SMART HKATPase_4 532 716 IPR003594 -
Gso5g2062 1048 Gene3D CHASE domain 151 366 IPR042240 -
Gso5g2062 1048 PANTHER HISTIDINE KINASE 4 61 1035 - -
Gso5g2062 1048 Pfam Response regulator receiver domain 900 1028 IPR001789 GO:0000160
Gso5g2062 1048 Gene3D - 484 718 IPR036890 -
Gso5g2062 1048 PANTHER TWO-COMPONENT HISTIDINE KINASE 61 1035 - -
Gso5g2062 1048 Coils Coil 470 490 - -
Gso5g2062 1048 Gene3D - 394 483 - -
Gso5g2062 1048 SUPERFAMILY CheY-like 897 1033 IPR011006 -
Gso5g2062 1048 SMART HisKA_10 420 485 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2062 Gso-Chr5 43586729 43593928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2062 23 1041 Histidine Kinase Gene Family AT2G01830 68.401 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso5g2062 HATPase_c 1.1e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2062 K14489 - gmx:100789894 1987.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2062 5 43586729 43593928 Gso8g0416 8 3848693 3855621 GST