Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2051 ATGGTGAAATCTTCCGGTTCGGTGCCTCCTTTCTTGAAAAAATGTTACGATATGGTCCAAGACTGCAACACCGACTCCGTTATCTGTTGGAGCCACGACGGTGTCAGCTTCGTCATCTCCGACATCACTCAATTCTCCGTCACACTTCTTCCTACCTATTTCAAACACAACAATTTCTCAAGTTTCATCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATACGGATTCCTGGGAATTTGCCAATGAAAACTTTGTTAGGGGTCAAAAGCATTTGTTGAAGAATATACATAGAAGGAAACATCCACACAGTGCAGATCAGCAAAAGGCATTGCCACAGCAAGACAATTGTGATGAACCATCCCAAGAAGCACCAAATCATGGCCTTTGGAAAGAAGTTGAGAATCTAAAACTTGATAAAAATTCGCTCACACAGGAATTGGTCAAACTTAGGCAACATCAGGAATCTGCTGAGAGTAAGTTGCTGCTCCTGAGTGATCGCCTTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTGTCATTCTTAGTCATGGTTGTGCAAAGCCCTGGGTTCATGGTTCAGCTTCTTCATCCTAAGGAAAATAATTGGCGTTTGGCTGAATCATGGAATAGATTGGATCAAGATAAACAAGATGACAAGCCAGTTGCTTCTGATGGGATGATAATAAAGTATAAACCACCTGTAGGTGAAAAACTAAAGCCCGTAGTTCCTCTATCTCCTGGTTTCGAAAATCAACCAGAACCTGAGCTTTCTGCTGATGGGCTGAAAGACTTGTGCATCAGTTCTGAATTCTTGAAAGTACTTCTGGATGAAAAATTGTCTCCGTTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCTGATGATGGTTCATGGGAACAGCTTTTTCTTGGCAGTCCTTTCCTGGGAAACATTCAAGATTCTAAGAATGAAAGTGAGGGGCACACCAACAGTGGAATGGAGATGGAACCAACAATATCTGAGACTCCAAATGAAAATTCTCGAACTTTTGAATCGATGATCGTAGAGATGGAGAAAACTCGAGAATAA 1077 0.4123 MVKSSGSVPPFLKKCYDMVQDCNTDSVICWSHDGVSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDSWEFANENFVRGQKHLLKNIHRRKHPHSADQQKALPQQDNCDEPSQEAPNHGLWKEVENLKLDKNSLTQELVKLRQHQESAESKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENNWRLAESWNRLDQDKQDDKPVASDGMIIKYKPPVGEKLKPVVPLSPGFENQPEPELSADGLKDLCISSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSPFLGNIQDSKNESEGHTNSGMEMEPTISETPNENSRTFESMIVEMEKTRE* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2051 358 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 342 IPR027725 -
Gso5g2051 358 MobiDBLite consensus disorder prediction 315 347 - -
Gso5g2051 358 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g2051 358 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g2051 358 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g2051 358 MobiDBLite consensus disorder prediction 108 122 - -
Gso5g2051 358 Coils Coil 134 161 - -
Gso5g2051 358 Gene3D - 3 101 IPR036388 -
Gso5g2051 358 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 342 - -
Gso5g2051 358 MobiDBLite consensus disorder prediction 315 358 - -
Gso5g2051 358 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g2051 358 MobiDBLite consensus disorder prediction 99 126 - -
Gso5g2051 358 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g2051 358 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g2051 358 SUPERFAMILY "Winged helix" DNA-binding domain 7 100 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2051 Gso-Chr5 43494515 43497230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2051 8 309 HSF AT1G67970 50.000 3.27e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso5g2051 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2051 K09419 - gmx:100813694 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2051 5 43494515 43497230 Gso8g0404 8 3747770 3750621 GST