Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2045 ATGGCTGTGACAAAAGAGAAAGAGGATGTTCGGAACACTGGGAAGAGATTGAAATGCATGAGGAATGAAGAAGAAGAAGTTTATGAAGAAGAAGAGAGTGAGCTTCCTTTAAAGCCAGGATTTTTCTTCTACCCAACAACACCCACTTCCTTTGTTGTATCTGATGCTCTTGAACCCGATTTTCCCATCATATATGTCAACAAGGTCTTTGAAATCTCCACTGGATATCGTGCTGACGAGGCCCTCGGTCGCAATTGTCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGAGGAGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGCCTCGAGGAAGGTGTTGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAGGATGGTACTCCTTTGGTGAACAGACTGAGACTTGCGCCAATTCATGACGATGATGGAACTGTGACACATGTGATAGGTATCCAACTCTTTTCTGAGGCAAATATAGATCTGAACCGTGTCTCATATCCAGTCTTCAAAGAGACTTGCAATCAAGATTTTGATAAGACTGGTAAATATAATCCTAAGAGTGGACAATCATTGTACAGTCAGCACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGCTTGACACCGAGGGATGTTGCATCCATTGGGTCTGTATGCAGGAGGATCCGTCAATTAACAAAGAACGAGCATGTCAGGAAGATGGTATGTCAAAATGCGTGGGGCAAAGAAGTGACGGGCACATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTTACCACTCTCGAAGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTTGATGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCATCCCCTCCCGGAAGGTGGGGCCACACGCTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGGTGTGGTAGGCAGGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAGGTTTGTGGTGGAACACCACCACTTCCTAGATCATGGCATAGCTCTTGCACAATTGAAGGGTCCAAATTGGTTGTCTCCGGCGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATATTTACTGGACCTCACAACAGATAATCCAACATGGAGAGAAATTCCAACTTCATGGGCTCCTCCTTCTCGGTTGGGGCACTCACTCTCAGTCTATGGGAGGACTAAGATTCTAATGTTTGGAGGACTTGCCAAGAGTGGACACTTGCGGCTACGATCAGGCGAGGCTTATACAATTGACTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATATAGCGCATTCACAGGGTTAGCGAGTCAAAGTGCTGTTGTTCCTCCTCCTAGGCTGGATCATGTTGCTGTCAGCATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCTGGTCTTCACTCACCATCTCAGCTCTTTCTGTTGGACCCCTCTGAAGAAAAACCATCCTGGAGGATCCTCAATGTTCCTGGGCAACCGCCGAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACAAGGGTGTTGGTGTTGGGTGGACACACTGGGGAGGAATGGATACTGAATGAGTTGCATGAGTTATGCTTGGCAAGTCGACAGGACTCTGACCTGTGA 1863 0.4659 MAVTKEKEDVRNTGKRLKCMRNEEEEVYEEEESELPLKPGFFFYPTTPTSFVVSDALEPDFPIIYVNKVFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQDFDKTGKYNPKSGQSLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2045 620 Gene3D - 502 618 IPR015915 GO:0005515
Gso5g2045 620 Gene3D - 200 251 - -
Gso5g2045 620 Gene3D - 280 501 IPR015915 GO:0005515
Gso5g2045 620 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 6 617 - -
Gso5g2045 620 TIGRFAM sensory_box: PAS domain S-box protein 62 157 IPR000014 -
Gso5g2045 620 CDD PAS 47 157 IPR000014 -
Gso5g2045 620 SUPERFAMILY F-box domain 201 275 IPR036047 GO:0005515
Gso5g2045 620 Pfam Kelch motif 525 572 IPR011498 GO:0005515
Gso5g2045 620 SMART pac_2 122 163 IPR001610 -
Gso5g2045 620 Pfam F-box domain 207 244 IPR001810 GO:0005515
Gso5g2045 620 PANTHER ADAGIO PROTEIN 3 6 617 - -
Gso5g2045 620 Pfam Galactose oxidase, central domain 415 466 - -
Gso5g2045 620 Pfam Galactose oxidase, central domain 366 413 - -
Gso5g2045 620 SUPERFAMILY Kelch motif 507 611 IPR015915 GO:0005515
Gso5g2045 620 SUPERFAMILY PYP-like sensor domain (PAS domain) 58 158 IPR035965 -
Gso5g2045 620 SUPERFAMILY Kelch motif 287 506 IPR015915 GO:0005515
Gso5g2045 620 Gene3D PAS domain 44 169 - -
Gso5g2045 620 Pfam PAS domain 57 157 IPR000014 -
Gso5g2045 620 Pfam Galactose oxidase, central domain 301 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2045 Gso-Chr5 43442372 43445790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2045 50 171 AGC Kinase Gene Family AT5G58140 35.484 1.42e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2045 K12116 - gmx:100301889 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2045 5 43442372 43445790 Gso8g0396 8 3698365 3701564 GST