Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2042 ATGGCCGAACGTGGAGGCGGAGACCGTGCCGGTTTCGGTCGCGGCTTTGGCGGTCGTGGACGCGGCGGCGACAGGGGACGAGGGCGGCGCAGGGCAGGAGGGCGCCGCGACGAGGAGGAGAAGTGGGTCCCAGTGACGAAGCTGGGGCGCCTGGTGAAGGAGGGGAAAATTCGGAGCCTGGAGCAGATCTACCTACACTCGCTCCCAATCAAGGAGCACCAAATCATTGACACCCTCGTGGGGCCCACCCTGAAGGACGAGGTGATGAAGATCATGCCCGTCCAGAAGCAGACCCGCGCCGGTCAGCGAACCCGCTTCAAGGCCTTCGTGGTGGTCGGCGACAACAACGGCCACGTCGGTCTCGGAGTGAAGTGCAGCAAGGAAGTCGCCACCGCCATACGCGGCGCCATCATTCTCGCAAAGCTCTCTGTTATTCCTGTGAGGAGAGGCTATTGGGGTAACAAGATCGGAAAGCCCCACACCGTTCCCTGCAAGGTTACCGGAAAGTGTGGCTCCGTCACCGTCCGCATGGTCCCCGCCCCTCGTGGGTCCGGAATCGTCGCCGCTAGGGTCCCCAAGAAGGTCTTGCAGTTCGCTGGAATCGATGACGTCTTCACTTCCTCCAGGGGTTCCACCAAAACCCTCGGAAATTTCGTCAAGGCTACTTTTGACTGTTTGCTGAAAACCTACGGTTTTCTAACACCTGAATTCTGGAAGGAGACTCGGTTCTCCAAATCACCATTCCAAGAGTACACTGATCTATTGGCAAAGCCAACAGGGAAGGCCCTTATCCTCGAGGAGGAAAGGGTGGAGGCTTGA 819 0.5922 MAERGGGDRAGFGRGFGGRGRGGDRGRGRRRAGGRRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLAKPTGKALILEEERVEA* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2042 272 ProSitePatterns Ribosomal protein S5 signature. 101 133 IPR018192 -
Gso5g2042 272 PANTHER 40S RIBOSOMAL PROTEIN S2-1-RELATED 1 270 - -
Gso5g2042 272 TIGRFAM uS5_euk_arch: ribosomal protein uS5 37 244 IPR005711 GO:0003735|GO:0006412|GO:0015935
Gso5g2042 272 Pfam Ribosomal protein S5, C-terminal domain 168 240 IPR005324 GO:0003735|GO:0005840|GO:0006412
Gso5g2042 272 Gene3D - 41 146 - -
Gso5g2042 272 ProSiteProfiles S5 double stranded RNA-binding domain profile. 84 147 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso5g2042 272 Pfam Ribosomal protein S5, N-terminal domain 84 148 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso5g2042 272 SUPERFAMILY dsRNA-binding domain-like 80 149 - -
Gso5g2042 272 PANTHER RIBOSOMAL S SUBUNIT 1 270 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso5g2042 272 MobiDBLite consensus disorder prediction 1 39 - -
Gso5g2042 272 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 240 IPR020568 -
Gso5g2042 272 Gene3D - 147 240 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2042 Gso-Chr5 43421306 43423314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2042 38 260 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.928 2.71e-153 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2042 K02981 - gmx:100797105 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2042 5 43421306 43423314 Gso8g0392 8 3676370 3678411 GST