Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2041 ATGTCATCCCCAAACTCCGTCCCTCAGTCCCACGCGCCGCTCCTTCTCCCGCGCCCCGATGCCGCCGCCCGCCTCCCCATCCTAGCGCTCCTCCTCGGCCGCCGCGGCCACTCCGCCGTGGTCCGGGAGACGGCGGCGCGTGAGCTGGAGGAGCGCCGCGCCGACTGGACCTACTCGAAGCCGGTGGTGGCGCTCGACATGACGTGGAACATGGCATTCGTGCTGGTCTCGGCGGTGATGCTCGCCTGCACCGTCAAGGAGAACCCCAACACGCCGATCCGCTGGTGGATCTGCGGCTACGCGCTGCAGTGCCTCGTCCACGTGGCCCTCGTGTGGCTCGAGTACCGCAGGAGGAACGACGCTCCCAGGGACGAGGAATCTGCTGCCAGCCTCCAATACGACGACGTCAACGATAGCGACGAGGACGATGTTGGAACCTCCGGGAGTTCCTCTTCCTCCGGATTCACAAAACGATGTGCGTCATTGAATACCATGATTTCATTACTTTGGTGGATGGTGGGCTTTTATTGGGTTGTCTCTGGTGGTGATATTCTGCTGCAAGATGCTCCACGTTTATACTGGTTGTCTGTTGTCTTTTTGGCATTTGATGTCTTCTTTGCTATCTTTTGTGTTGTTTTGGCATGCTTGATTGGAATTGCCCTCTGTTGTTGTTTGCCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAGGGTGCATCAGAATCAGATCTCAGTATACTTCCAAAATACAGATTTCAATTGTTAAGCAATGAGGAAACACCTGGTGAGGGAGGAGGATCAATGATTCCTATGGAGACCAGCAACGGTTATTCGGTGAATGAACGAACACTTTCACCAGAGGATGCAGAATGCTGTATATGCATCTCTTCTTATGAGGATGGAGCTGAACTTCATGTTCTTCCTTGTAACCATCATTTCCATTCTACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTATAATATTCTCAAGGGAAATGAACAGGTGTGA 1035 0.5256 MSSPNSVPQSHAPLLLPRPDAAARLPILALLLGRRGHSAVVRETAARELEERRADWTYSKPVVALDMTWNMAFVLVSAVMLACTVKENPNTPIRWWICGYALQCLVHVALVWLEYRRRNDAPRDEESAASLQYDDVNDSDEDDVGTSGSSSSSGFTKRCASLNTMISLLWWMVGFYWVVSGGDILLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSILPKYRFQLLSNEETPGEGGGSMIPMETSNGYSVNERTLSPEDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2041 344 MobiDBLite consensus disorder prediction 135 155 - -
Gso5g2041 344 Pfam Ring finger domain 292 334 IPR001841 -
Gso5g2041 344 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 344 - -
Gso5g2041 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Gso5g2041 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 339 IPR013083 -
Gso5g2041 344 SUPERFAMILY RING/U-box 284 338 - -
Gso5g2041 344 CDD RING-H2_PA-TM-RING 292 334 - -
Gso5g2041 344 PANTHER TARGET OF ERK KINASE MPK-1 1 344 - -
Gso5g2041 344 SMART ring_2 293 333 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2041 Gso-Chr5 43416103 43419948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2041 1 343 C3H Transcription Factor Family AT1G68070 67.714 2.80e-169 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2041 - K13148 gmx:100797651 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2041 5 43416103 43419948 Gso8g0391 8 3670632 3674587 GST