Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2035 ATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCAAAAGTTGGATCTTTCTGGTGGCCATATATTACCAATCTCCCCGAAACATACAATGTGCCGATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTTCTCTTCTTCATCAGGTAAACAAAAGGTGTCGATTTCTTCTTGATTTTGAGAGAGAAGTCAAGCGTGCTTTGGTAAGTCTTACACCAGATAAGCATCCTTTTGGTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTATCATCTAGAGCATTTCGATTGTATGGTGAAAAGGATCCCAATGGGATACGCATTGACGTACCGATGATGCTCCCCCTAATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAAGAACAAGATACCAGTGACTCGAAGATGAAAGTGAAGGTTGTGGCCGAGACAGCAATTAAAGAAGATGATCCCCTGTTACTCTGCTATGGCTGTTTAAACAATGATCTTTTCCTTCTTGATTATGGATTTGTGATGCACTCAAACCCTTATGATTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCAAGCACAGCAGCTGGAGTTTCTTCGCCAAATTTCTCAACACCTGCTCCATGGCAGGAACTGATCTTATCTCAGCTGAATCTAGCTGGAGAAACTCCAGATCTCAAGGTGAGCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGTTGGCTGCATTGAGGGTAATTCTTTCAACTAATGTGGAAACTATGCAGAAGTATGACCTCAGCATACTCCAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGAGATAGCTGTATTTCGCACCCTAATTGCTTTGTGTGTCATTGCACTGGGACACTTTCCCACCCAAATAATGGATGATGAATCACTGTTGAAGCAGGGTGCTTCAGGTTCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATCTGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGCTAAAGCTTGTATCATCAAAGGAAACAACAACCGCAGAAGGCTAA 1095 0.4237 MKLGLKLLQERAKVGSFWWPYITNLPETYNVPIFFPGEDIKNLHYASLLHQVNKRCRFLLDFEREVKRALVSLTPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGEKDPNGIRIDVPMMLPLIDMCNHSFNPNARIVQEQDTSDSKMKVKVVAETAIKEDDPLLLCYGCLNNDLFLLDYGFVMHSNPYDCIELKYDGALLDAASTAAGVSSPNFSTPAPWQELILSQLNLAGETPDLKVSLGGQETVEGRLLAALRVILSTNVETMQKYDLSILQSLDAEAPLGVANEIAVFRTLIALCVIALGHFPTQIMDDESLLKQGASGSTELAIQYRIQKKSVIIDVMKNLSRRLKLVSSKETTTAEG* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2035 364 Pfam SET domain 20 169 IPR001214 GO:0005515
Gso5g2035 364 ProSiteProfiles SET domain profile. 54 169 IPR001214 GO:0005515
Gso5g2035 364 CDD SET_LSMT 1 183 - -
Gso5g2035 364 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 1 361 - -
Gso5g2035 364 Gene3D set domain protein methyltransferase, domain 1 1 183 - -
Gso5g2035 364 PANTHER F21J9.27 1 361 - -
Gso5g2035 364 Pfam Rubisco LSMT substrate-binding 219 339 IPR015353 -
Gso5g2035 364 SUPERFAMILY SET domain 3 187 IPR046341 -
Gso5g2035 364 Gene3D - 220 362 IPR036464 -
Gso5g2035 364 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 179 360 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2035 Gso-Chr5 43367934 43370865 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso5g2035 SET 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2035 - - gsj:114413660 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g2035 5 43367934 43370865 Gso8g0386 8 3630530 3633360 GST