Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2023 ATGCCTGCAGGCTTCGCCATTCAAATCCCCACAACAACCTTCTATGTAACGATGAACACTAGTCGTTCCTCCTTCCTTTCATCCATACTCACACTTGCTTTCTTCTTCTTAACAACTTTGCCACAATCCTACTCTCAAAAAAATGACACGCACTCTATTTGCAGCCAATTATCATTCAGTTGTGGAACTCTCAGAAACATATCGTATCCATTCTGGGGAGGGAACCGACCTCAGTTTTGTGGCCGCAATGGGTTCAAGCTCACGTGCATGCATGACCAAAACACCTCGGTTCAAGTTGGTTCCCAAAGATTCAACGTACTAAACATTAACCAAACTGCTTCCACCTTGAGAATGGCGAGAACAGACCTTGTCTATGATCGCTGCTCTTCCAATTTCACCAACACTTCTCTGAGTGTCAGTCCCTTCAGTTTTCCCTCCACCGTTCAGAATGTCACTATATTCTACGAATGCCCTTCTGGGATTAATTCAGTTGTGGGAAACAATTTTACGTGCCAGAATGATAGTAATAATAAACATGCTTTCTATGTGGTCAATGGAACTCAGCTGAAGCAGTTCCCAGGCCTTCAGAAGTGTGGCGTTAGTGTTCAGATGCAAGTTTCAGAGGGTGTTGTTTGGGACTCTGAGGGTGGAATTGGGGCGTTGGAGAAAGCGCTGGAGAAAGGGTTTGATGTGCGGTACGATGCAGAGTTGAGTTCTCAGTGCACAGCATGCAGGGATTCTGGAGGAGCATGTGGGACGAATGAGAATGATTTGGCTCAGTTCTCTTGTTATTGCTCCGGTGGAACTCATGGTTCACTGTGCTCTACTCACAAAAGTCAAAGGAAGAACAGAGTGTTGAAGCTGGTTTTAGGTTTCGTTGCTACTGGATTTGCACTGCCTCTCATTGCTGTCATCATATGCCGTAACAAAGCTAGGATTTGGAAATTTATATTAGTACAAGTTGGTAAGATAAAAAAGAATGATCAAGTTATAGAAGCCTTCCTTGAAAGCCAAGGTTCTCTAGGTCTAAAAAGATACAGTTTCTCCGATATCAAGAAAATAACCAACTCCTTCAAAATTAAACTGGGAGAAGGTGGTTATGGTTCTGTCTACAAAGGAAAATTACTCAATGGTTGCTCGGTGGCAGTGAAGATACTGAACGAGTCAAAAGAGAATGGCGAAGAGTTTATCAATGAGGTTGCTAGCATAAGCAAAACATCCCATGTTAACATTGTCTCTCTCCTTGGATTTTGTCTAGATGGAAGCAGAAAAGCTCTAATATATGAGTTCATGTCCAATGGTTCACTTGAAAAATACATTCACGAGAAGACAGCTGAAACAAAAACTACTACCCCATCCTTGAGTTGGGAGAGATTGCACCAGATTGCAATAGGCATAGCTCGAGGACTAGAGTACCTGCACAAAGGATGCAACACTCGGATTCTGCATTTCGACATTAAGCCACATAACATCCTTTTGGATGAAGCTTATCGCCCGAAGATATCAGATTTTGGGCTTGCTAAGCTTAGCACAAGAGATGAAAGCATCATTTCAATGTCAAATGCTAGAGGGACAGTAGGGTATGTGGCTCCCGAGGTGTTCAGCAAAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTGCTAGAAATGGTTGGAGGGCAGAAGAACATGGACGTTGAAGCTAGTCGCTCAAGCGAGATATATTTCCCGCAGTTGGTTATTTATAAGAAGCTTGAGCAGGGCAATGATTTGGGACTTGATGGGATATTGTCCGGTGAGGAAAATGAGATAGCAAAGAGAATGACTATGGTGGGTTTGTGGTGCATTCAGACAATTCCTTCACATAGACCTACCATAAGTAGAGTCATTGACATGTTGGAAGGTAGTGTGGATTCCTTGGAAATGCCACCAAAACCTTTCCTGTCTTCTCCTCCAAGATCATCAACAGATTTTTCCACTGCAATATCCAAATCACTTGCCAGTGTCTGA 2010 0.4299 MPAGFAIQIPTTTFYVTMNTSRSSFLSSILTLAFFFLTTLPQSYSQKNDTHSICSQLSFSCGTLRNISYPFWGGNRPQFCGRNGFKLTCMHDQNTSVQVGSQRFNVLNINQTASTLRMARTDLVYDRCSSNFTNTSLSVSPFSFPSTVQNVTIFYECPSGINSVVGNNFTCQNDSNNKHAFYVVNGTQLKQFPGLQKCGVSVQMQVSEGVVWDSEGGIGALEKALEKGFDVRYDAELSSQCTACRDSGGACGTNENDLAQFSCYCSGGTHGSLCSTHKSQRKNRVLKLVLGFVATGFALPLIAVIICRNKARIWKFILVQVGKIKKNDQVIEAFLESQGSLGLKRYSFSDIKKITNSFKIKLGEGGYGSVYKGKLLNGCSVAVKILNESKENGEEFINEVASISKTSHVNIVSLLGFCLDGSRKALIYEFMSNGSLEKYIHEKTAETKTTTPSLSWERLHQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDEAYRPKISDFGLAKLSTRDESIISMSNARGTVGYVAPEVFSKSFGGVSHKSDVYSYGMMLLEMVGGQKNMDVEASRSSEIYFPQLVIYKKLEQGNDLGLDGILSGEENEIAKRMTMVGLWCIQTIPSHRPTISRVIDMLEGSVDSLEMPPKPFLSSPPRSSTDFSTAISKSLASV* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2023 669 ProSitePatterns EGF-like domain signature 1. 263 274 IPR000742 -
Gso5g2023 669 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 10 669 - -
Gso5g2023 669 Gene3D Phosphorylase Kinase; domain 1 320 430 - -
Gso5g2023 669 MobiDBLite consensus disorder prediction 651 669 - -
Gso5g2023 669 Pfam Wall-associated receptor kinase C-terminal 171 267 IPR032872 -
Gso5g2023 669 MobiDBLite consensus disorder prediction 643 669 - -
Gso5g2023 669 SUPERFAMILY Protein kinase-like (PK-like) 337 634 IPR011009 -
Gso5g2023 669 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Gso5g2023 669 Gene3D Transferase(Phosphotransferase) domain 1 431 642 - -
Gso5g2023 669 Pfam Protein kinase domain 361 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g2023 669 ProSiteProfiles Protein kinase domain profile. 356 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g2023 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Gso5g2023 669 Pfam Wall-associated receptor kinase galacturonan-binding 54 119 IPR025287 GO:0030247
Gso5g2023 669 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 669 IPR045874 GO:0004672
Gso5g2023 669 SMART serkin_6 356 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2023 Gso-Chr5 43278495 43283109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2023 51 668 Receptor kinase-like Gene Family AT1G66910 39.599 2.16e-147 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso5g2023 Pkinase 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2023 - - gmx:100816285 1325.46