Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2021 ATGGACAAACTATTTGTCATTGGATACTGTCTTCTTTATTCTCTCTTGGTTGTGCATGGCAAACAATTTTCATGCAATGAAACCCCCTACCCCCGTGTGTGCATGCATTACATTGAAACTACCAACACATTATCAACCCTAGATGCTTCATCTTCTTCCTTCCATGATCTGGCCCTTAGGGTTACCATGGAGCAAGCCATTGTGGCTCATAAACTTGTCTCAAAAATGGACTTGAATAATTTCAAGGACAAGCGAGCCAAGTCTGCATGGGAAGATTGTTTGGAGCTCTATGAGGACACACTTTATCAGCTCAAACGCTCAATGAACTCAAACAAACTAAATGATAGGTTGACTTGGCAAAGTGCATCCATTGCCAACCATCAAACATGCCAAAATGGTTTCACTGAATTTAACCTTCCCTCACACCTAAATTACTTCCCCTCCATGCTAAGCAACTTCTCCAAACTGCTTAGCAATTCCTTGTCCATTAGCAAAACTATGATGATGACTTTGACAACTTCATCGACCAAACAAAGTGGTGGGAGAAGGTTGTTGCTTTCAGATGGCTTCCCCTATTGGTTGTCACATTCAGATAGAAGGCTTCTTCAGGAAACAACACCAAAAGCTGATGTTGTGGTGGCACAAGATGGGAGTGGGAACTATAAGACCATCTCAGAGGGCGTGGCTGCAGCTGCTAAGCTCAGTGGGAAAGGGCGTGTTGTTGTGCACGTCAAAGCTGGTGTCTACAAAGATAGCATTGATATTAAGAGGACAGTCAAGAACTTAATGATCATTGGAGATGGGATGGGTGCTACTATTGTTACTGGTAATCTTAACGCACAAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGCGGTTTCTGGTGACGGCTTCATCGCTCGAGACATAACCTTTGAGAACACAGCGGGACCACAACAGCACCAAGCGGTGGCTCTCCGATCCGGTGCGGACCACTCAGTGTTCTACCGGTGCAGCTTTATGGGGTACCAAGACACCTTATACGTCTACGCCAACCGCCAATTCTACCGTGATTGTGACATATACGGAACCATAGACTTCATATTCGGGGATGCCGTGACGGTTCTTCAAAACTGCAACATCTATGTGAGGAAACCGATGAGCAATCAGCAGAACACGGTGACGGCACAAGCAAGAACCGACCCTAACGAGAACACGGGCATCATCATCCATAACTGTCGTATAACTGCAGCTGGGGACTTGATAGCAGTGCAAGGCTCTTTCAAAACCTTCCTAGGTCGCCCATGGCAAAAGTACTCAAGGACTGTGGTCATGAAGAGTGCCCTTGATGGCTTGATTGACCCTGCAGGTTGGTCTCCGTGGAGTGGAAACTTTGGTCTGAGCAGCCTCTACTACGCAGAATATGCGAATACAGGAGCTGGTGCTAGCACTGCAGGGAGGGTCAAATGGCCAGGGTTTCGTCTGATCTCCAGTTCTGAGGCTGTGAAATTCACCGTTGGAAATTTCTTGGCTGGGGGCTCGTGGATTTCTGGGAGTGGCGTGCCCTTTGATGCAGGTTTATGA 1566 0.4674 MDKLFVIGYCLLYSLLVVHGKQFSCNETPYPRVCMHYIETTNTLSTLDASSSSFHDLALRVTMEQAIVAHKLVSKMDLNNFKDKRAKSAWEDCLELYEDTLYQLKRSMNSNKLNDRLTWQSASIANHQTCQNGFTEFNLPSHLNYFPSMLSNFSKLLSNSLSISKTMMMTLTTSSTKQSGGRRLLLSDGFPYWLSHSDRRLLQETTPKADVVVAQDGSGNYKTISEGVAAAAKLSGKGRVVVHVKAGVYKDSIDIKRTVKNLMIIGDGMGATIVTGNLNAQDGSTTFRSATFAVSGDGFIARDITFENTAGPQQHQAVALRSGADHSVFYRCSFMGYQDTLYVYANRQFYRDCDIYGTIDFIFGDAVTVLQNCNIYVRKPMSNQQNTVTAQARTDPNENTGIIIHNCRITAAGDLIAVQGSFKTFLGRPWQKYSRTVVMKSALDGLIDPAGWSPWSGNFGLSSLYYAEYANTGAGASTAGRVKWPGFRLISSSEAVKFTVGNFLAGGSWISGSGVPFDAGL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2021 521 SMART PMEI_2 13 163 IPR006501 GO:0004857
Gso5g2021 521 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 16 520 - -
Gso5g2021 521 SUPERFAMILY Pectin lyase-like 205 520 IPR011050 -
Gso5g2021 521 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Gso5g2021 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 168 IPR035513 -
Gso5g2021 521 CDD PMEI-like_3 24 167 - -
Gso5g2021 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 167 IPR035513 -
Gso5g2021 521 Pfam Pectinesterase 210 506 IPR000070 GO:0030599|GO:0042545
Gso5g2021 521 Pfam Plant invertase/pectin methylesterase inhibitor 24 163 IPR006501 GO:0004857
Gso5g2021 521 TIGRFAM PME_inhib: pectinesterase inhibitor domain 24 167 IPR006501 GO:0004857
Gso5g2021 521 Gene3D - 204 521 IPR012334 -
Gso5g2021 521 PANTHER PECTINESTERASE 16 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2021 Gso-Chr5 43262004 43265457 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2021 24 521 Carbohydrate Esterase AT1G23200 53.220 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2021 - - gmx:100816802 1023.46