Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2020 ATGGACAAGCTCTTTTTCAACTACTGTTTCGTTGGATACTGCCTTCTTTATTCTCTCTTGCTTGTGCATGGCAAACAATTGTCATGCAATGAAACCCCTTACCCTCGTGTGTGCAAGCATTACATTGAAACTACCAACACATTATCAGCCCTAGATGCTTCCCCTTCTTATTCCTTCCATGATATGGCCCTTAAGGTCACCATGGAGCAAGCCACGGAGGCTTATAAACTCGTCTCAAACATGGACTTGAATAATTTCAAGGACAAGCGAGCCAAGTCTGCATGGGAAGATTGTTTGGAGCTCTATGAAAACACACTTTATCAGCTCAAACGCTCAATGAACTCAAACAATCTAAACGATAGGTTGACTTGGCAAAGTGCATCCATTGCCAACCATCAAACATGCCAAAATGGTTTCACTGATTTCAACCTTCCTTCTCACCTGAATTACTTTCCCTCCATGCTAAGCAACTTCTCTGAATTGCTTAGCAATTCCTTGTCCATTAGCAAGGCTATGACATTGACATCATTCTCATCATCACCATCGACCAAACAAAGTGGTGGGCGAAGGTTGCTTTCAGATGGCTTCCCCTATTGGCTGTCACGTTCAGATAGAAGGCTTCTTCAGGAAACAGCATCAAAAGCTGATGTTGTCGTGGCACAGGATGGGAGTGGGAACTATAAGACTATCTCAGAAGGTGTGAATGCAGCTTCTGGTCTCAGTGGGAAAGGGCGTGTTGTTGTGCATGTCAAAGCTGGCGTATACAAAGAGAATATTGATATCAAGAGGACAGTGAAGAACTTAATGATCGTTGGTGATGGAATGGGTGCTACTATTGTTACTGGTAATCTTAACGCACAAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGCGGTTGATGGTGACGGGTTCATCGCTCGGGACATAACCTTCGAGAACACAGCGGGACCGCAAAAGCACCAAGCGGTGGCTGTCCGTTCCGGCGCCGACCAGTCGGTGTTCTACCGGTGCAGCTTTAAGGGTTACCAAGACACCTTATACGTTTACGCCAACCGTCAATTCTACCGTGACTGTGACATATACGGAACCATAGACTTCATTTTCGGTGACGCAGTGACGGTGCTTCAAAACTGCAACATCTATGTGAGGAAACCGATGAGCAACCAGCTGAACACGGTGACGGCACAAGGAAGAACCGACCCTAACGAGAACACAGGGATAATCATCCATAACTGTCGTATAACTGCAGCTGGGGATTTGAAAGCAGTGCAGGGCTCTTTCAGAACCTTTCTAGGTCGCCCATGGCAAAAGTACTCAAGGACTGTTTTCATGAAGAGTGCCCTTGATAGCTTGATTAGCCCCGCAGGTTGGTTTCCGTGGAGTGGAAACTTTGCTCTAAGCACCCTCTATTACGCTGAATATGGGAATACAGGAGCAGGTGCAGGCACAGGAGGGAGGGTGAAATGGGAAGGGTTTCGCGTGATCTCCAGTACTGAGGCTGTGAAATTCACCGTTGGAAGTTTCTTGGCTGGGGGCTCGTGGATTCCTGGGAGTGGCGTACCCTTTGATGCAGGTTTATGA 1584 0.4678 MDKLFFNYCFVGYCLLYSLLLVHGKQLSCNETPYPRVCKHYIETTNTLSALDASPSYSFHDMALKVTMEQATEAYKLVSNMDLNNFKDKRAKSAWEDCLELYENTLYQLKRSMNSNNLNDRLTWQSASIANHQTCQNGFTDFNLPSHLNYFPSMLSNFSELLSNSLSISKAMTLTSFSSSPSTKQSGGRRLLSDGFPYWLSRSDRRLLQETASKADVVVAQDGSGNYKTISEGVNAASGLSGKGRVVVHVKAGVYKENIDIKRTVKNLMIVGDGMGATIVTGNLNAQDGSTTFRSATFAVDGDGFIARDITFENTAGPQKHQAVAVRSGADQSVFYRCSFKGYQDTLYVYANRQFYRDCDIYGTIDFIFGDAVTVLQNCNIYVRKPMSNQLNTVTAQGRTDPNENTGIIIHNCRITAAGDLKAVQGSFRTFLGRPWQKYSRTVFMKSALDSLISPAGWFPWSGNFALSTLYYAEYGNTGAGAGTGGRVKWEGFRVISSTEAVKFTVGSFLAGGSWIPGSGVPFDAGL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2020 527 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Gso5g2020 527 PANTHER PECTINESTERASE 20 526 - -
Gso5g2020 527 ProSitePatterns Pectinesterase signature 1. 242 261 IPR018040 -
Gso5g2020 527 Gene3D - 210 527 IPR012334 -
Gso5g2020 527 SMART PMEI_2 17 168 IPR006501 GO:0004857
Gso5g2020 527 Pfam Pectinesterase 216 512 IPR000070 GO:0030599|GO:0042545
Gso5g2020 527 SUPERFAMILY Pectin lyase-like 211 526 IPR011050 -
Gso5g2020 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 173 IPR035513 -
Gso5g2020 527 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 20 526 - -
Gso5g2020 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 28 172 IPR006501 GO:0004857
Gso5g2020 527 CDD PMEI-like_3 27 173 - -
Gso5g2020 527 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857
Gso5g2020 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 172 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2020 Gso-Chr5 43249688 43253121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2020 3 527 Carbohydrate Esterase AT1G23200 51.356 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2020 - - gmx:100817350 1021.15