Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2007 ATGGAGAGAGATTTCATGGGTCTCAACTTGAAAGAACCACTAGCTGTGGTGAAGGAGGAGATGAACAATGATGGCTGCAAAAACTCTGGCTTCAAAAAAGGTCGGATTGCACAGTGGCCATTCTCGAACAAAGTATCTGCCCTTCCACATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAATACAGTGTCTGATACCTTATCATCTTCTGGGTTTATGTCTATCTTAAGTCAAGAAGCATTTGACACTAGTCAGAAACGCTCTGCTGGTGAACCCCAGAAGTCTTTCAATCATGATGGGCAAGGTGACCTTCATTTTTCGCTGACTTCATATCCTGTACAACATGATGTGAATCATCCTCATGATGTGAAGATGTTTTCAGTTCCAAATCAAGCAATTTCAGTTTCCTTGGGGAATCCATTCCTGAAGAATCATTTTGCAGCTGCTGGTCAGAAGCCGTTACTTGGGGGAATACCTGTTACCACATCTCATTCAGTTCTTCCCTCTGCTGTTGCTGTTGCTGGAATGACCGAATCATGTAACAGTGTGAAACCATCTGCTCAACTTACCATCTTCTATGCTGGTACTGTCAATATCTTTGATGATATCTCCACTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGCAATAGCTTATCTGCAGCTTCTAACATGGCACAGCCAAATGTTCAGGTGCCTATCTCGAAGTTGGGTGCTGGTGCTGGTGTGCCTGTGAGTCAACCTGCAAATACATCACCTGGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCACATACCGGTGTACAGTCAGGGAGTGGCTTAACTAGCACTGATGAATTTCTGGCTGCTAAAACAACTGGAGTTCCCAACACTCCTATTTGCAATGTGGAGCCTCCAAAGGTAGTCAGTGCAACCACTATGTTGACATCAGCTGTACCTCAGGCCCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAACGCAAAGAAAGGGTGATGAGTGCAGCACCATACAACCTCAACAAGAAGTCTGAAGAGTGTGCCACTGCAGAATACGCTGGTGTTAACTTTTCTGCCACTAACACTGTTTTGGCCAAGCAAGGATAG 1116 0.4435 MERDFMGLNLKEPLAVVKEEMNNDGCKNSGFKKGRIAQWPFSNKVSALPHLMSFKASQDDKTKNTVSDTLSSSGFMSILSQEAFDTSQKRSAGEPQKSFNHDGQGDLHFSLTSYPVQHDVNHPHDVKMFSVPNQAISVSLGNPFLKNHFAAAGQKPLLGGIPVTTSHSVLPSAVAVAGMTESCNSVKPSAQLTIFYAGTVNIFDDISTEKAQAIMLLAGNSLSAASNMAQPNVQVPISKLGAGAGVPVSQPANTSPGSGLSSPLSVSSHTGVQSGSGLTSTDEFLAAKTTGVPNTPICNVEPPKVVSATTMLTSAVPQARKASLARFLEKRKERVMSAAPYNLNKKSEECATAEYAGVNFSATNTVLAKQG* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2007 371 Pfam Jas motif 317 341 IPR018467 -
Gso5g2007 371 Pfam tify domain 189 219 IPR010399 -
Gso5g2007 371 SMART tify_2 185 220 IPR010399 -
Gso5g2007 371 MobiDBLite consensus disorder prediction 248 278 - -
Gso5g2007 371 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 364 IPR040390 -
Gso5g2007 371 ProSiteProfiles Tify domain profile. 185 220 IPR010399 -
Gso5g2007 371 PANTHER PROTEIN TIFY 7 13 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2007 Gso-Chr5 43153406 43157292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2007 39 350 Tify Gene Family AT3G17860 35.417 4.69e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gso5g2007 tify 7.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2007 K13464 - gmx:100807043 713.761