Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2006 ATGGACGACGTCAAAGGTAAGGTGAAGGGCTTCATGAAGAAAGTCAACAACCCTTTCTCCTCTTCCTCATCCGGCAAATTCAAGGGCCAAGGTAGAGTCCTCGGTTCTTCTTCTTCTTCTTCTCCCACTAATTCCAATCCTACCCCTCGCCCCCACCCTAATTCGCAGAAACCCTCCTCTTCAGCCACACCCTATCCCAAACCCTCACCCCAGAAAACGGACCCATATAGAACCACCGAGAAGCCTCGCAAAGATGATGGCTTTGACCCCTTTGATTCTTTGGTCACTAATTCCAATAGATCACAAAATGGGTACTCGCTGGACGTCTTTGAATGCCCTATTTGTAAACAACCCTTTAGATCCGAAGAAGAGGTGTCTGCACATGTTGACGGTTGTTTGAATAACCCTGTTGAGCGTGGAGGTGATGATGGAAATGGGGCCTCAGAGAGTGATGGTGGGTCTAATACTAATAGTGATAGTGAATTTGAGGTTTGTGTTGAGACTTACAGTTCAGGGAAGCCATCTGAAGGATCGGTCGATGTTGTTCTCAAACTGTTGAGGAATATTGGTAGGGAACCTGCGAATGTGAAGTTTAGGAGGATCAGGATGAATAATCCCAAGATAAAAGAGGCTGTTGGTGATGTTGCCGGGGGAGTTGAGTTGCTGAGTTTCGTAGGATTTGAACTCCGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCCACAGAGGAGCAAATAAAAATCATTAAGAAAGCAATAGTGTTGCTGGAATCACAACTTGTACAACAAGGACCTCCAAAGAGAGATGATTCGCCGTCTGCAACTTCTGCTGAGATGGGTCCAAAGGCTGAACCAAAGCTGGTCGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGGGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAGCCTTTCAGCCGAAGAGGTCAGTAGAGAAGCTGAATTAAGGAGAAAAAAGATTGCAGATTCTCAGCTTTTAATCCCTAAGTCACTTAGAGAAAAACAAGCAAAAGCTTCCAGGAAGAGATACACTAAAGCTATTATCAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTGCTGCTATCTACAAGTTTGTCTGCTCGGCATTAAAAGAACCAGGCTTGGAATTTGAGCTAATGCATCCGGTACTTATCCAACGACGTGTGATCCCCCATTTTCCAAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGACCTGGTACCTTCTGCTCTAATTAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATAAGTGAACCACTTGTAAATGGTTAA 1398 0.4492 MDDVKGKVKGFMKKVNNPFSSSSSGKFKGQGRVLGSSSSSSPTNSNPTPRPHPNSQKPSSSATPYPKPSPQKTDPYRTTEKPRKDDGFDPFDSLVTNSNRSQNGYSLDVFECPICKQPFRSEEEVSAHVDGCLNNPVERGGDDGNGASESDGGSNTNSDSEFEVCVETYSSGKPSEGSVDVVLKLLRNIGREPANVKFRRIRMNNPKIKEAVGDVAGGVELLSFVGFELREENGETWAVMEVPTEEQIKIIKKAIVLLESQLVQQGPPKRDDSPSATSAEMGPKAEPKLVDRQVKVFFAVPERVAAKIELPDSFYSLSAEEVSREAELRRKKIADSQLLIPKSLREKQAKASRKRYTKAIIRIQFPDGVVLQGVFAPWEPTAAIYKFVCSALKEPGLEFELMHPVLIQRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNG* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2006 465 Gene3D - 348 441 - -
Gso5g2006 465 SUPERFAMILY PUG domain-like 174 260 IPR036339 -
Gso5g2006 465 MobiDBLite consensus disorder prediction 264 284 - -
Gso5g2006 465 CDD PUB 166 260 - -
Gso5g2006 465 MobiDBLite consensus disorder prediction 15 45 - -
Gso5g2006 465 SUPERFAMILY Ubiquitin-like 327 438 IPR029071 -
Gso5g2006 465 Pfam PUB domain 176 251 IPR018997 -
Gso5g2006 465 Gene3D - 157 258 - -
Gso5g2006 465 MobiDBLite consensus disorder prediction 1 102 - -
Gso5g2006 465 Gene3D Classic Zinc Finger 107 137 - -
Gso5g2006 465 MobiDBLite consensus disorder prediction 74 90 - -
Gso5g2006 465 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 464 - -
Gso5g2006 465 SMART PGNneu 177 244 - -
Gso5g2006 465 MobiDBLite consensus disorder prediction 133 161 - -
Gso5g2006 465 Pfam UBX domain 355 405 IPR001012 GO:0005515
Gso5g2006 465 ProSiteProfiles UBX domain profile. 354 438 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2006 Gso-Chr5 43142354 43146082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2006 1 386 C2H2 Transcription Factor Family AT2G01650 57.250 3.84e-147 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g2006 UBX 0.00014 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2006 K14011 - gmx:100807576 887.871