Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g2001 ATGGCAGACGTTGAGGTCGATGTGGCGGCTGCAGCAGCAGCAGGGCAGCCGAAGAAGAGAACGTTCAAGAAGTTCAGTTTCAGGGGCGTGGATCTCGATGCGCTTCTGGACATGTCCACCGATGAACTCGTGAAGATGTTCAGTGCTCGCGCACGTAGAAGGTTCCAGAGAGGCCTCACCAGAAAGCCCATGGCCTTGATCAAGAAGCTTCGCAAAGCGAAAAGAGAAGCTCCACCAGGTGAGAAGCCAGAACCTGTCCGCACCCACCTCCGCAACATGATTATTGTGCCTGAGATGATTGGTAGCATTATTGGAGTGTACAATGGCAAGACCTTTAATCAGGTTGAAATCAAACCTGAGATGATTGGGCATTATCTGGCAGAGTTTTCTATTTCATACAAACCCGTTAAGCACGGGAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTTATTCCTCTTAAGTGA 468 0.4979 MADVEVDVAAAAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g2001 155 SUPERFAMILY Ribosomal protein S19 58 139 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gso5g2001 155 Pfam Ribosomal protein S19 53 138 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gso5g2001 155 Gene3D 30s Ribosomal Protein S19; Chain A 12 155 IPR023575 GO:0003735|GO:0005840|GO:0006412
Gso5g2001 155 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 2 155 - -
Gso5g2001 155 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gso5g2001 155 ProSitePatterns Ribosomal protein S19 signature. 108 132 IPR020934 GO:0003723
Gso5g2001 155 Hamap 30S ribosomal protein S19 [rpsS]. 51 144 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gso5g2001 155 TIGRFAM uS19_arch: ribosomal protein uS19 22 155 IPR005713 GO:0003735|GO:0006412|GO:0015935
Gso5g2001 155 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 10 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gso5g2001 155 PRINTS Ribosomal protein S19 family signature 88 107 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gso5g2001 155 PRINTS Ribosomal protein S19 family signature 108 120 IPR002222 GO:0003735|GO:0005840|GO:0006412
Gso5g2001 155 PRINTS Ribosomal protein S19 family signature 120 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g2001 Gso-Chr5 43092785 43094196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g2001 1 155 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.452 2.90e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g2001 K02958 - gmx:100499781 290.812