Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1998 ATGGCAGAATTCACTGCAGATTTGCAAAGTCTTAGATTTCCTTTCTTAGATATTGACAACATGGAAATGCAGAACTTGATGATGCCATTCTCCTGTGAAAGCTTCTTAGGTTCTCCAGAAGCTGAATTTGCAGGAAACTTGGAAGAGAATTTTCCTGATCACAATGAAGTTCCAGTTTTAGTTCCTATTATTAATTCAGTTAAAAATGAAATCCATGAAGGTCAAAAGAGGAAAGCAACTGATATATGGGAGCCAAGTTCTGCAAATTCAACTCCTGCTGTTTTTGAGAGTGGAAGCAAGACAAAAAATAGTTGTGGAAGAGGCAAGAGAGTAAAAAGGAATATGATAGAAGACAAGAAACCGAATGAAGTAGTTCATGTTAGAGCCAAACGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACAATGGGTATGGCAATAATGTTGGACGAGATAATAAACTATGTCCAGTCCTTGCAGCACCAAGTGGAGTTCCTCTCTATGAAGCTTAATGCAGCAAGTACCTATTATGACTTCAATTCAGAGTCAGATGTTTTGGAAACAATGCAGAGAGCAAGAGCATCCGAGGTGAAAGAGTTGGACAGGTATGTGAGAGAAGAATGTGAAGGAGTTTCTTGCTTTGAACCAACATGGTCATGGCCCCTGTGA 741 0.3954 MAEFTADLQSLRFPFLDIDNMEMQNLMMPFSCESFLGSPEAEFAGNLEENFPDHNEVPVLVPIINSVKNEIHEGQKRKATDIWEPSSANSTPAVFESGSKTKNSCGRGKRVKRNMIEDKKPNEVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLNAASTYYDFNSESDVLETMQRARASEVKELDRYVREECEGVSCFEPTWSWPL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1998 246 Gene3D - 130 202 IPR036638 GO:0046983
Gso5g1998 246 Coils Coil 210 230 - -
Gso5g1998 246 MobiDBLite consensus disorder prediction 85 108 - -
Gso5g1998 246 SMART finulus 139 189 IPR011598 GO:0046983
Gso5g1998 246 MobiDBLite consensus disorder prediction 85 104 - -
Gso5g1998 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 183 IPR011598 GO:0046983
Gso5g1998 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 201 IPR036638 GO:0046983
Gso5g1998 246 CDD bHLH_AtBPE_like 123 208 - -
Gso5g1998 246 Pfam Helix-loop-helix DNA-binding domain 137 184 IPR011598 GO:0046983
Gso5g1998 246 PANTHER TRANSCRIPTION FACTOR BEE 1 15 242 - -
Gso5g1998 246 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 15 242 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1998 Gso-Chr5 43075394 43077326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1998 99 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 66.216 4.23e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso5g1998 HLH 0.00022 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1998 - - gmx:100810945 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1998 5 43075394 43077326 Gso8g0355 8 3358622 3360544 GST