Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1995 ATGGAAGAAAAGCTACCTCCTGGGTTCAGGTTCCATCCCACAGACGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCCGATATTAGCTTCACATCCAAAGCTGTAGCAGTTGTTGATTTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGCGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGGAAATATCCAACTGGGCTTCGAACCAACCGAGCTACTGAATCAGGGTATTGGAAAACCACAGGAAAAGACAAGGAAATATTTGGGGGTGGAGTTTTGATAGGGATGAAGAAAACCTTAGTCTTTTATATGGGAAGAGCTCCGAGGGGTGAGAAAAGTAACTGGGTTATGCACGAATATAGGCTTGAAAACAAGCAACCCTATTCTTCCAAGGAAGAATGGGTGATTTGCAGAGTCTTCCAAAAGAGCTCAGCACCAAAGAAACCACAGCAGACATCATCCTCCCAACCATCTCAAGAGTCTCCTATCTCAATGGTCAATGAATTTGGTGATGTCGACCTACCAAATCTTAATAGCATTGCAAATTCATCCAGTAGCTTCACCAACAATATTGCATACAATGGTGATCATCCTAGCAATGTTAACACCAATAATATGAATTTGACCATGAATTGGCCTTCTTCAACTGAGCTGGTTCCATCTCTCCCATGGCCTTCTGGATTGCTGAATCCTAACCTTTCTGTGAATTCATTGCTTCTCAAGGCATTGCAACTTAGAAATACTTATCAACAAAGAGAAACTACGACCAGTACTAGTGATCATCACTTTGCAACATATGTTCCTCAAGGATTTTCTCATCATAATATTGGAACTGATAAACATCACTTCCCCCCAAATCTCAGTGCTTCTTCTTCTTCCAAAGCTTTAGAATCTTGTGTGCCGCAGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 966 0.4151 MEEKLPPGFRFHPTDEELITYYLLRKVSDISFTSKAVAVVDFNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLENKQPYSSKEEWVICRVFQKSSAPKKPQQTSSSQPSQESPISMVNEFGDVDLPNLNSIANSSSSFTNNIAYNGDHPSNVNTNNMNLTMNWPSSTELVPSLPWPSGLLNPNLSVNSLLLKALQLRNTYQQRETTTSTSDHHFATYVPQGFSHHNIGTDKHHFPPNLSASSSSKALESCVPQQEQPFNMDSIW* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1995 321 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 259 - -
Gso5g1995 321 SUPERFAMILY NAC domain 3 150 IPR036093 GO:0003677|GO:0006355
Gso5g1995 321 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Gso5g1995 321 MobiDBLite consensus disorder prediction 292 321 - -
Gso5g1995 321 PANTHER BNACNNG63190D PROTEIN 2 259 - -
Gso5g1995 321 ProSiteProfiles NAC domain profile. 5 150 IPR003441 GO:0003677|GO:0006355
Gso5g1995 321 MobiDBLite consensus disorder prediction 287 321 - -
Gso5g1995 321 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1995 Gso-Chr5 43053926 43057193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1995 1 321 NAC Transcription Factor Family AT3G18400 56.637 9.04e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso5g1995 NAM 4.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1995 - - gmx:100775645 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1995 5 43053926 43057193 Gso8g0350 8 3320773 3324179 GST
Gso5g1995 5 43053926 43057193 Gso7g0790 7 8707141 8710108 PCT
Gso5g1995 5 43053926 43057193 Gso9g1511 9 39370610 39373492 PCT
Gso7g0790 7 8707141 8710108 Gso5g1995 5 43053926 43057193 PCT
Gso9g1511 9 39370610 39373492 Gso5g1995 5 43053926 43057193 PCT