Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1992 ATGAATTCCCCGCCTGATGACAACAATTCAGAACCTAGAGAGTTGGGCAGCCCGGATGCTAGTTCCAATGAAATTGAGAATTTTCTATCCTTATATGGTGAGGTGGAAGCCAAACATCGATTGCTTTTGGTTCAGTGGTTAACTAGTCTTGTCCCCTCATTGAACCTTCCAATAAATGTCACGGATGGTGAATTAAGAGCATGCTTGAGCAATGGTACAGTTTTGTGCCAGATACTGAACAAGCTACGACATGGTACCGTGAATGTGGTTAGTGAACCTGATAATTTTCTGCCATCACAATCAGAAAATGTTAAATCGTTTCTGAAAGCTTTGGACGGAATGGGATTGCCCCGGTTTGAAATATCCGACCTAGAGAAGGGGTCTATGAAAGCTGTTGTGGATTGTCTTTTAACACTTAGAGAGAAAAGTTTGCAGAATGCTTTGGGAGATAATATATCTGTAACTAATTCCAACACGGTGAGCCCTCATGGGAATGCACCATTCAATTTTCATTGTTCTCCAACATTTGGTGGAGAGCAGAGGAAGATTGCAGCTGGGTCGATGTTGCAACGTGTTAATAGTACCCCTATTATTATGGCAGAACCATCAGTTTCATTAATACACCATGTTGGTCATAAGTTTCATGAGGAGTTTCAACTGAAACCTGGGAGTTACGCAGATCTTCCTGCTGCAAAAATATCAGAAATGATGAAATCAAACAGTATAGATAATGCTCCCACTCAGTCTCTTCTGAGTGTTGTGAATGGTATTCTTGAAGAAAGTGTTGAAAGAAGAAATGGGGAAATACCTCATCGTGTGGCATGCTTGTTGAAAAAGGTTACCCAAGAGATTGAGCGGCGCATGTCAACTCAAGCAGAACATTTGCGAACTCAAAACAATCTTTTCAAGGCTCGGGAAGAAAAATACCAATCGAGAATAAGAGTACTTGAGGCACTTGCATCTGGAACTAGAGATGAGAGTGAGATATGTTCTAGCCAGGTTCAGCAGTTTAAGGGTGAGATGATCAAAGAGGAAGAAAAGAAGGTAGATGAGAATGAAGTTGTTAGGTTGATAAAAGAGCAGGAGGACAAAAATTTGGAAATTTCAGCTTTGAAGGTAGAACTGGAAACAGCCAAAAGAACATGTGAAGTACAATTCTCACAGTTGGAAGAAGAAGCCAACGGTTTTAAAGCAACATTGACACGGAAGGTCCAAGAATATGAGCATCAATTGGAAGAATTAAGAAATGAGGCTGAAAAGATCAAAGAGGAAGTAAAAACGACAGACGAAAAGGAAACTATTAGGATCATGAAAGAACAGGAGGACAAAAAATTAGAAATTTCATCATTGAAGAAAAAACTGGAAACAAAAAAAAAAACATATGAAGTAGAATGTTCACAGTTCGTAGAAGAAGCTAAAGATGCTAAACAGAAGGCCCAAGAATATGAGAATCAATTGAAAGCATTAAGAAATAAGGTTGAAAAGATCAAAGAGGAGGTAAAAACGGAAAATGAAAACGAAATTGTTAGGTTGATGAAAGAACAAGAGGACAAAAATTTGGAAATTTCAGCATTAAAGCAAGAACTAGAAAAAACCAAAAGAACATATGAAGTACAACGTTCACAGTTGGAAACAGAAGCTAAGGATGCTAAAGTAGAATTAACTCAAAAGTCTCGAGAATATGAGCACCGATTGGAAGAATTAAGAAATAAGGCTGAGAAGATCAGAGAGGAAGAAAAGGAGGCAGATGAGAAAGAAATCATCAGGTTGATGAAAGAGCAGGAGGACAAAAATTTGGAAATTTCAACATTGGAACAAAAGTCTCGAGAATATGAGCATCGATTGGACGAATTAAGAAATAAGATTAAGGAGCTTGAGGTTTCTTCTGATTCAAAAGATCAGAAGTGGAACATGAAAATGAACCAAATACAGACTGTTATAAACTTTCAATTGAGTTCCCTACAGAAATTGGAATTATCTTGGGAATGCATTAAGCAAAATGTTATGAAAGAGCAAACGGTTTATGCAGAGGATTGTGATCGGTTAGGTGTTTATCTTAAACCGCTGTTACATGCAGCTGAGAACTACCATACTCTTCTTGCTGAAAATCAAAAAATGTTTAATGAGATTCAAGAATTAAAAGGAAATATCAGAGTATATTGTCGAATTAGACCATTTCTTTCAGGCAAAAAGGAAAAACAATCTATTGTTAAACTCATTGGTGAAAATGATTTGGTTGTGGCAAATCCATCCAAAGAAGGAAAAGATGCTCTTCGATCATTTAAATTTAACAAGGTTTTCGGCTCTGCCACAACTCAAGCGGAGGTATACTCTGACATTCAATCCTTTATAAGATCAGTTCTAGATGGGTATAATGTGTGTATATTTGCTTATGGCCAAACTGGTTCAGGGAAAACTTATACAATGACTGGTCCAAATGGGGCAACAAGCGAGACTATTGGTGTTAATTATCGAGCTCTAAATGACCTCTTCAAGATTGCCACAAGTAGAGAAAGCCTCATGGACTACGAGATTGGAGTTCAAATGGTTGAGATATATAATGAGCAAGTCCGTGACTTGTTAATAACAGATGGTTCTCCAAAAAGAACACTTGGGATATTGACTCGACCTCAACCAAAGGGCTTAGCAGTACCAGATGCTAGCTTGTTTCCTGTGAAATCGCCTTCAGATGTAATTAAGCTAATGGACATTGGACTTAAAAATAGAGCCATTGGTGCAACTGCTATGAATGAAAGAAGTAGCCGTTCTCACAGTGTTGTCTCAATTCATATTCGTGGGAAGGACTTGAAGACTGGTTCTACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGATCGGTCTGAAGTAACTGGGGATAGGCTTAAGGAAGCACAACATATAAACAGATCACTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGGAGTTGAATTAGGAGCTGCACGAAGTAGCAAAGAGAGCAAAGATGTGAGAGAATTAATGGAACAGGTGTCTTCTTTGAAGAACGCTATTTTTGCAAAAGAGGAGGAGATTGAGAGGCTTCAATTACTCAAAGGTTCAGTTGGTAGCATTGTTAAGCGAAACCAAATTTCACGAAGTAGAAGTATTAAGCACTATGAAGCTTTTAACCAGCAACCGATGGATGACCATATACACCAAAATGAATTTCTCCATCAATCTGAACTTCATGAGGGAAATATAGGAAAGAATATTGCTGCAATTGCAGAAACTTCAAGATTTACAGATTCTGATTTTGATGAAAAATCAAGTGATCTTTCTGACAGTGCTGTTGCTCCAGGCACAGAAACTGACGGTTCAGAAAATTCTAGTCTCACCGAACGCACAACATCATCAGATAAGAGATCTAAACCAATTCGCAAAACTATTCAAGTGATGAGGAAATTAAACCGAACTTCATCTATCGCGACCACCCCAGTAAAGGACCCCTTGAAGAAGTCACCAGGTATAAAAAAGAGCGTCAGTATAGGCAACCTTAAACCTCCAAAACTGTGGAAGTAA 3723 0.383 MNSPPDDNNSEPRELGSPDASSNEIENFLSLYGEVEAKHRLLLVQWLTSLVPSLNLPINVTDGELRACLSNGTVLCQILNKLRHGTVNVVSEPDNFLPSQSENVKSFLKALDGMGLPRFEISDLEKGSMKAVVDCLLTLREKSLQNALGDNISVTNSNTVSPHGNAPFNFHCSPTFGGEQRKIAAGSMLQRVNSTPIIMAEPSVSLIHHVGHKFHEEFQLKPGSYADLPAAKISEMMKSNSIDNAPTQSLLSVVNGILEESVERRNGEIPHRVACLLKKVTQEIERRMSTQAEHLRTQNNLFKAREEKYQSRIRVLEALASGTRDESEICSSQVQQFKGEMIKEEEKKVDENEVVRLIKEQEDKNLEISALKVELETAKRTCEVQFSQLEEEANGFKATLTRKVQEYEHQLEELRNEAEKIKEEVKTTDEKETIRIMKEQEDKKLEISSLKKKLETKKKTYEVECSQFVEEAKDAKQKAQEYENQLKALRNKVEKIKEEVKTENENEIVRLMKEQEDKNLEISALKQELEKTKRTYEVQRSQLETEAKDAKVELTQKSREYEHRLEELRNKAEKIREEEKEADEKEIIRLMKEQEDKNLEISTLEQKSREYEHRLDELRNKIKELEVSSDSKDQKWNMKMNQIQTVINFQLSSLQKLELSWECIKQNVMKEQTVYAEDCDRLGVYLKPLLHAAENYHTLLAENQKMFNEIQELKGNIRVYCRIRPFLSGKKEKQSIVKLIGENDLVVANPSKEGKDALRSFKFNKVFGSATTQAEVYSDIQSFIRSVLDGYNVCIFAYGQTGSGKTYTMTGPNGATSETIGVNYRALNDLFKIATSRESLMDYEIGVQMVEIYNEQVRDLLITDGSPKRTLGILTRPQPKGLAVPDASLFPVKSPSDVIKLMDIGLKNRAIGATAMNERSSRSHSVVSIHIRGKDLKTGSTMVGNLHLVDLAGSERVDRSEVTGDRLKEAQHINRSLSALGDVIFALSQKSPHVPYRNSKLTQLLQTSLGDQAKTLMFVQINSDVSSYSETLSTLKFAERVSGVELGAARSSKESKDVRELMEQVSSLKNAIFAKEEEIERLQLLKGSVGSIVKRNQISRSRSIKHYEAFNQQPMDDHIHQNEFLHQSELHEGNIGKNIAAIAETSRFTDSDFDEKSSDLSDSAVAPGTETDGSENSSLTERTTSSDKRSKPIRKTIQVMRKLNRTSSIATTPVKDPLKKSPGIKKSVSIGNLKPPKLWK* 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1992 1240 SUPERFAMILY Calponin-homology domain, CH-domain 36 143 IPR036872 -
Gso5g1992 1240 Coils Coil 1058 1085 - -
Gso5g1992 1240 MobiDBLite consensus disorder prediction 1150 1240 - -
Gso5g1992 1240 Coils Coil 361 392 - -
Gso5g1992 1240 Coils Coil 397 431 - -
Gso5g1992 1240 Gene3D Kinesin motor domain 711 1085 IPR036961 -
Gso5g1992 1240 ProSiteProfiles Calponin homology (CH) domain profile. 37 144 IPR001715 GO:0005515
Gso5g1992 1240 Pfam Kinesin motor domain 722 1042 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso5g1992 1240 PRINTS Kinesin heavy chain signature 790 811 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso5g1992 1240 PRINTS Kinesin heavy chain signature 914 931 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso5g1992 1240 PRINTS Kinesin heavy chain signature 945 963 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso5g1992 1240 PRINTS Kinesin heavy chain signature 994 1015 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso5g1992 1240 SMART ch_5 39 142 IPR001715 GO:0005515
Gso5g1992 1240 Pfam Calponin homology (CH) domain 42 141 IPR001715 GO:0005515
Gso5g1992 1240 Coils Coil 696 716 - -
Gso5g1992 1240 MobiDBLite consensus disorder prediction 1162 1181 - -
Gso5g1992 1240 Coils Coil 437 506 - -
Gso5g1992 1240 SMART kinesin_4 714 1052 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso5g1992 1240 ProSiteProfiles Kinesin motor domain profile. 716 1044 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gso5g1992 1240 Coils Coil 508 635 - -
Gso5g1992 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 1082 IPR027417 -
Gso5g1992 1240 MobiDBLite consensus disorder prediction 1 21 - -
Gso5g1992 1240 MobiDBLite consensus disorder prediction 1200 1214 - -
Gso5g1992 1240 Gene3D - 32 145 IPR036872 -
Gso5g1992 1240 Gene3D - 350 390 - -
Gso5g1992 1240 Gene3D - 502 544 - -
Gso5g1992 1240 Gene3D - 582 628 - -
Gso5g1992 1240 Gene3D - 427 469 - -
Gso5g1992 1240 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 362 452 - -
Gso5g1992 1240 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 513 592 - -
Gso5g1992 1240 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 579 1240 - -
Gso5g1992 1240 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 2 351 - -
Gso5g1992 1240 PANTHER KINESIN MOTOR CATALYTIC DOMAIN PROTEIN 443 498 - -
Gso5g1992 1240 PANTHER KINESIN-LIKE PROTEIN KLP-3 579 1240 - -
Gso5g1992 1240 PANTHER KINESIN-LIKE PROTEIN KLP-3 513 592 - -
Gso5g1992 1240 PANTHER KINESIN-LIKE PROTEIN KLP-3 362 452 - -
Gso5g1992 1240 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 351 - -
Gso5g1992 1240 PANTHER KINESIN-LIKE PROTEIN KLP-3 443 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1992 Gso-Chr5 43021941 43030859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1992 477 1044 Calmodulin-binding Proteins AT5G65930 32.637 1.73e-71 260
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1992 5 43021941 43030859 Gso8g0347 8 3282919 3290153 GST
Gso5g1992 5 43021941 43030859 Gso9g1514 9 39402886 39408120 PCT
Gso9g1514 9 39402886 39408120 Gso5g1992 5 43021941 43030859 PCT