Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1990 ATGAGAGACATGAAAGACGCAGGTGCCTTGGGAGGCAAGACAGCAAGAGCCTGCGACAGCTGCGTAAGCAGAAGAGCAAGGTGGTTCTGTGCAGCTGATGATGCTTTCCTCTGCCATGGCTGCGACACTTTGGTTCATTCCGCGAACCAGTTAGCAAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCTTCCTCAAAAGTAACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCGCGTCACAACAGCAAGCACTTTGCGCTGCAACAGCGTCTCAAAGACGAAGTTCTCTTCAACAACACCAGTGTTCTTCCCCTCGTGCCGGAGCTCGGAGGGGAAGAACAAGAACCGGTGGTTGTGGATAACGATGAGACGGAGGAGCAGATGCTGTGTCGGGTGCCCGTGTTCGACCCTTTTGATGTGAGAACCGATGACTTGGATAGTTTTTCTGACATGGATTTCGCTGAGTTTGCTGCTGATGTTGAAAGCCTACTTGATAAAGAAGACGATGAAATAAGTGCGTGTGTGGGAGGGGGAGAGGGAGAGGGAGAGGGAGTTCAAGGTGCAATGGTGAAGGTTAAGGATGAAGAAGAAATTGATGGTGATGTAGCGTGTTATCTGGAATCGGTTTTTGATGATGCCTTTCATTGGAATAACATTGAGTCTGTGCTGTCAGATGCACGGGAAGAGAAGGAGGGTGTGGTGGCGTGTGATGTAGGTGTCGGTGATGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTAAACTATGATGAGGTTATTACTGCTTGGTCTAGCCAAGGTTCTTCTCCATGGACAACTTCAAACCCACCTAAGTTCAACTCTGATTATGACTTCTCCTTGGGTTTGAGTGGTGTAGGTGGGGAAGTAAGAAGCTTAAGGGGGCACCTAGATGGTGGAAGAGAAGCAAGAGTGTCAAGGTATAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGGAAGTTGAACGCAGAGAAAAGGCCTAGAATGAAAGGTCGTTTTGTGAAGAGGACATGCTTTGTTGGAGCCAATGCTTTTCCTGCTTACCACTGA 1110 0.4829 MRDMKDAGALGGKTARACDSCVSRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTHAWHSGFTRKARTPRHNSKHFALQQRLKDEVLFNNTSVLPLVPELGGEEQEPVVVDNDETEEQMLCRVPVFDPFDVRTDDLDSFSDMDFAEFAADVESLLDKEDDEISACVGGGEGEGEGVQGAMVKVKDEEEIDGDVACYLESVFDDAFHWNNIESVLSDAREEKEGVVACDVGVGDEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSDYDFSLGLSGVGGEVRSLRGHLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1990 369 Pfam CCT motif 314 356 IPR010402 GO:0005515
Gso5g1990 369 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Gso5g1990 369 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Gso5g1990 369 CDD Bbox1_BBX-like 17 60 - -
Gso5g1990 369 SMART bboxneu5 13 60 IPR000315 GO:0008270
Gso5g1990 369 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 362 - -
Gso5g1990 369 ProSiteProfiles CCT domain profile. 314 356 IPR010402 GO:0005515
Gso5g1990 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1990 Gso-Chr5 43010096 43011969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1990 7 356 C2C2-CO-like Transcription Factor Family AT1G25440 43.972 4.48e-87 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso5g1990 zf-B_box 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1990 - - gmx:100812563 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1990 5 43010096 43011969 Gso8g0346 8 3274044 3275969 GST
Gso5g1990 5 43010096 43011969 Gso7g0785 7 8651610 8654045 PCT
Gso7g0785 7 8651610 8654045 Gso5g1990 5 43010096 43011969 PCT