Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1983 ATGGACATTGATGGAACTGCTGATGTTGATCAGAACTCAGGAGCTGACAAAAACAAGGGAAAATGCAAACTTAATGTAGGGTCTCAGTCACTAGGATACCGCAGAGACTATATGGAGGTGCTGTCACCATTGAAGAATGGAGTTGTTGTTGACTGGAATATTGTAGACAACATATGGGATCATGCTTTGAGGGAATGCCTCCTAGTTGATCCTAAAGAGCGTCCAATGCTACTTGCCGAACCATGTTCCAACACTCAAGAACAGAGAGAATTCTGTCAACAGGCAGCAGAACTTATGTTTGAAAAATATAAAGTACCAGCGTTGTTTTTGGCAAAGAATGCTGTTCTCACATCTTTTGCATCAGGGTGTGCTACCTCATTAGTTATTGATAGTGGTGGTGGATCAACTACTGATGTACCAGTACTGGATGGTTATGTTCTTCAAAAGTGTTTGGATAAGGGGGAGTATACTGGCTTCTCTTGGCTCCTTCCAGTAGATGTGGTTCTCCAAGTCCGAGTATGA 522 0.4253 MDIDGTADVDQNSGADKNKGKCKLNVGSQSLGYRRDYMEVLSPLKNGVVVDWNIVDNIWDHALRECLLVDPKERPMLLAEPCSNTQEQREFCQQAAELMFEKYKVPALFLAKNAVLTSFASGCATSLVIDSGGGSTTDVPVLDGYVLQKCLDKGEYTGFSWLLPVDVVLQVRV* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1983 173 Pfam Actin 17 156 IPR004000 -
Gso5g1983 173 PANTHER ACTIN 19 158 IPR004000 -
Gso5g1983 173 PRINTS Actin signature 34 56 IPR004000 -
Gso5g1983 173 PRINTS Actin signature 91 104 IPR004000 -
Gso5g1983 173 PRINTS Actin signature 116 135 IPR004000 -
Gso5g1983 173 MobiDBLite consensus disorder prediction 1 21 - -
Gso5g1983 173 PANTHER BRAHMA ASSOCIATED PROTEIN 55KD 19 158 - -
Gso5g1983 173 SUPERFAMILY Actin-like ATPase domain 18 129 IPR043129 -
Gso5g1983 173 CDD NBD_sugar-kinase_HSP70_actin 42 146 - -
Gso5g1983 173 Gene3D - 5 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1983 Gso-Chr5 42945964 42950144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1983 11 151 Cytoskeleton Gene Families AT5G09810 33.333 5.48e-24 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1983 K11340 - gmx:100778866 284.263