Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1978 ATGGATTTAGAAGAGAAGTTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTTCTTCAGCAGTTCCTAAAATGTGGTCCAAAGAAGGAACTTCTTCAAATGTGTTTTGAGAAGGACAAAAAAAGCATTTCATCAAAAGGCAGAATGTCTGAAACTAAGTCAACCAGTAAGATAACTAAGAAACAAGACACGAAAAAAGTTTCTAGTTTCAGCCATCAGCCCCCTAGAAAGCAACCTCGGAAGGGTGAAAACCCTACTCGAATCATACCTCCTCTTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGATTTGTAAAAATGCTGCTTGTAGGGCGGTTCTGTCTATGGATGACACGTTTTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTGCTCAAGGAGACTCCTGTGGGTTGTCTTGCCATATCAAATGTGCCCTTCAACATGAAAAGGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCGTCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAGCAGCTAAATATAGCTAAGGATGCCCGGCGTGTAGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTCCTGGATGGAACCTCAAAATTCAAAGATTTGCATCAAACAGTACAAGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTGTCAATGGTGTTTCTTCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCATATTGCCAGTGATATACAGAAACTCTGCTCTCTTGCTATCGAGAAAGCTGATAGCTGGCTTGCCACTGTTCCCAATGTAAATTCAGATTCCACAGAGGGTTCTTTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCAGCCAAAATCATTTTAATTGAAATGTCAAGTATATGTTCTGAGGAAATTAAGGGATACAAGCTCTGGTATTACAAGAGTTGGGATGAATCACCCACTAAAGATCCTGTTTCCGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGATACACGTGACTTGGGTCATTCTGAGGCTAAGTGTTTCACCAAGAGCATTGAGATAATTAAAAACAATCCCTCTTCATCTGTTGCTATGAATAATGAAAAAGAGAACCTTCTAACTAGGGGTAATTCTTCGGCCTCCAAGATAGGGCCCAATGCCACAATGGAAGGCTATGGATTCAAGGTTCGAGACCTTGGAAAATTTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGCTGTGCCAATGTGAAAAATTGCTGTGGACAAAGTGAAATGGTGGATAAGCTTAGAATTCCAGAAGCACAGTTGCCTTCAGTTTCACGAGGCCTTGATTTAAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAACGGTTGCTCTTTGCTGCAAGCTGTTGAGGCAGATGATGATGCTGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCCCAGACCTGGACCCATGGGCCAACAGGAGAAGTGTCTGCTGTTGATTCTCGCATAGATATGTGCAAGAAAAGGATAGCAAGCACAAACGAAGAGACTCATGATTGTGACAGCACTTTGATAAATGGTTCTCCTTTACGCATATCTGATGGTTCTTGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATCAAACATGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTAAGGGCAACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAAACTCTTATCGATGATCCAGGTAGTTTGGCAGGACAACTTGTAGACTCTTTTTCTGATATTATATCCAACAAGAGGCTAAGAAGTGGATTCTGTAGTAAAGCTGGGGCATCAAATTAA 2166 0.4132 MDLEEKFLAKVSGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCGPKKELLQMCFEKDKKSISSKGRMSETKSTSKITKKQDTKKVSSFSHQPPRKQPRKGENPTRIIPPLDQSSDFGHSNTWICKNAACRAVLSMDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAQGDSCGLSCHIKCALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTSKFKDLHQTVQEAKAKLETEVGPVNGVSSKMARGIVSRLHIASDIQKLCSLAIEKADSWLATVPNVNSDSTEGSFPAACKFVFEEVTTSSAKIILIEMSSICSEEIKGYKLWYYKSWDESPTKDPVSVFPKSQRRILISNLKPCTEYTFRIISYTDTRDLGHSEAKCFTKSIEIIKNNPSSSVAMNNEKENLLTRGNSSASKIGPNATMEGYGFKVRDLGKFLRLAWAQEQGYLEEFCCANVKNCCGQSEMVDKLRIPEAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQAVEADDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRIDMCKKRIASTNEETHDCDSTLINGSPLRISDGSCSLDENFEYCVKVIRWLECEGHIKHEFRLKLLTWFSLRATEQERRVVNTFIQTLIDDPGSLAGQLVDSFSDIISNKRLRSGFCSKAGASN* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1978 721 PANTHER VIN3-LIKE PROTEIN 2-RELATED 55 716 IPR044514 GO:0010048|GO:0040029
Gso5g1978 721 Pfam Fibronectin type III domain 333 409 IPR003961 GO:0005515
Gso5g1978 721 MobiDBLite consensus disorder prediction 62 89 - -
Gso5g1978 721 CDD FN3 357 408 IPR003961 GO:0005515
Gso5g1978 721 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Gso5g1978 721 MobiDBLite consensus disorder prediction 11 37 - -
Gso5g1978 721 MobiDBLite consensus disorder prediction 574 589 - -
Gso5g1978 721 MobiDBLite consensus disorder prediction 62 117 - -
Gso5g1978 721 Gene3D Immunoglobulins 315 417 IPR013783 -
Gso5g1978 721 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Gso5g1978 721 MobiDBLite consensus disorder prediction 569 590 - -
Gso5g1978 721 PANTHER VIN3-LIKE PROTEIN 1 55 716 - -
Gso5g1978 721 SUPERFAMILY Fibronectin type III 333 409 IPR036116 GO:0005515
Gso5g1978 721 MobiDBLite consensus disorder prediction 12 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1978 Gso-Chr5 42905949 42917551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1978 124 712 PHD Gene Family AT3G24440 47.508 5.17e-177 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1978 - - gmx:100816128 1449.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1978 5 42905949 42917551 Gso8g0336 8 3159265 3169097 GST
Gso5g1978 5 42905949 42917551 Gso7g0767 7 8408198 8416686 PCT
Gso5g1978 5 42905949 42917551 Gso9g1544 9 39689430 39697872 PCT
Gso7g0767 7 8408198 8416686 Gso5g1978 5 42905949 42917551 PCT
Gso9g1544 9 39689430 39697872 Gso5g1978 5 42905949 42917551 PCT