Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1976 ATGGCAAGTCGAGTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCGCACCAAATCGAAGATGCATTAACTGTAACAGCTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGCGGAATACACCGAGAGTTTACACATCGGGTAAAATCAGTTTCAATGGCTAAATTTAGTGCACAGGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAGGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATATTGACAGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCAGCGGTGAGAGGACTTATGACAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCCATGAAAACAAGAGGACAGAGACTTATCACAGAAGCCCTTCATATGAGGACACACATGAACGTCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGTATATGATCAAGAAAATAGGCAATATGGTGATTACAAGAAAAGCCCTGGTCGTCCTCCAATAATCAATGATTGGCGTCGAGAAGATAGATTTGGGGATGGATGGAAATTTGAAGATCATAGAATATCTGATGGAAATCATAATGTGGAAAGTACTTCTCCTGAGCAAACCAAGGATCTGGATTCTTCCAGCCCACCTGCAGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAACAGTGGACAGGCTACTAATGGCTCAGCACTCACACAGAGAACTTCATCTTCCAGTAGCTTAGCATCCAGCAATGGAACCCCTGCAGAAGTTAAGCTTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCACCTGTTGCTTCAGCAATTCCTCAAGCCCCGCAAACTACTGTGGCTAAACATGGGATGCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATGTTGCTCCTGAGGCAAAAGCACCTCAGGGTCCTTCGAATATAAATCCACTTGAATCCATGCTGACACAATTGTCAGTACCAGTATCTTTACCTTCTCATGTTTCAAGAGCCCAAGGACCTTTGACGGGGTCAGCTCTTACCACTACTGCTGCAGGAGCTCCAATTGTTAGCAGCTTCTCAACATTCCCAGCCAGTGGTGCTTCAGTAACATCTTTTGGATTAACAACAGCATCAACTCTCAATAATGCAGGACAGTGGGCTACTTTGCAGTATCAGCAACAGCAACCTTTGCTCACTGCTGCTGCTAGTCAGCCTACTATTCAACAATCCACTCCACCAGTTGGTGGAGCTTTGAATAATCAGCCCTGGACTGTACCTTCTGTACAAGGGCACGCAAACACACCAATGCCTCATGCATCGCACCTTGTCCCAAAGCCTGCCAATGAGGCTAAATCCAGTGTTGTTTTACATCCTTCTACAGTAGACATAAAACCAAGTGGAAGAAGTGAGCTTCCTGAGGATCTATTCACTGTAAAATATTCACCGTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATGCAGTGCCCATGCCAAGTTATGCACAACCATCAAAATCAACAAATCCATTTGATGTCAGTAGCGAACCAACTCCAGTTCAAGCCCCAATGTTTCCTTCCATGTCATCTTTGCAAGGTGCTCTGCCTAGTGTAACGCCTTCAGCTACAATGCACCCATCAAACATGGGTAATATATCTCATGCCTGGAATCCACACTCATCATCACCATCTTATGTATTGCCTCCTCAAGCACAAACTCTTGCACCAGCAATGGGACTGGGGGCATACATGGGACAACAAATGGCAACTAACATGCCAATGCCAAGGCATCAAGGAATTGGGAGTTTTGCCACCGAGGCAACTGCTTTTGGATTCTCAAATCCAGATCAACAGCTGACTGGTAGGTTGTCAACTGCTGCTACCCCAAACACCTACCATGCAGGAGGGAACCCTTTCGGATGA 2094 0.4456 MASRVKEDEKNERIIRGLLKLAPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMAKFSAQEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNIDRLRDFIKHVYVDRRFSGERTYDKPPRVKGDKDDFHENKRTETYHRSPSYEDTHERRYSDRSSPGGRSPVYDQENRQYGDYKKSPGRPPIINDWRREDRFGDGWKFEDHRISDGNHNVESTSPEQTKDLDSSSPPAVRPVREILGENVVPLRISEPPKTNSGQATNGSALTQRTSSSSSLASSNGTPAEVKLETIKSLIDFDDDPEPPVASAIPQAPQTTVAKHGMPANSNDNNWASFDVAPEAKAPQGPSNINPLESMLTQLSVPVSLPSHVSRAQGPLTGSALTTTAAGAPIVSSFSTFPASGASVTSFGLTTASTLNNAGQWATLQYQQQQPLLTAAASQPTIQQSTPPVGGALNNQPWTVPSVQGHANTPMPHASHLVPKPANEAKSSVVLHPSTVDIKPSGRSELPEDLFTVKYSPFPAPVPGWQMGPPPSMGISIQYNNAVPMPSYAQPSKSTNPFDVSSEPTPVQAPMFPSMSSLQGALPSVTPSATMHPSNMGNISHAWNPHSSSPSYVLPPQAQTLAPAMGLGAYMGQQMATNMPMPRHQGIGSFATEATAFGFSNPDQQLTGRLSTAATPNTYHAGGNPFG* 698
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1976 697 MobiDBLite consensus disorder prediction 126 168 - -
Gso5g1976 697 CDD ArfGap_AGFG 12 122 - -
Gso5g1976 697 MobiDBLite consensus disorder prediction 222 238 - -
Gso5g1976 697 MobiDBLite consensus disorder prediction 126 294 - -
Gso5g1976 697 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Gso5g1976 697 PANTHER ARFGAP/RECO-RELATED 1 697 IPR044820 GO:0005096
Gso5g1976 697 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Gso5g1976 697 MobiDBLite consensus disorder prediction 195 221 - -
Gso5g1976 697 MobiDBLite consensus disorder prediction 260 294 - -
Gso5g1976 697 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Gso5g1976 697 PANTHER ARF GTPASE ACTIVATOR 1 697 - -
Gso5g1976 697 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Gso5g1976 697 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Gso5g1976 697 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Gso5g1976 697 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Gso5g1976 697 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso5g1976 Gso-Chr5 42877790 42885153 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1976 12 122 C2H2 Transcription Factor Family AT4G21160 35.043 1.72e-12 67.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1976 - - gmx:100781002 1390.56
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1976 5 42877790 42885153 Gso8g0334 8 3133633 3142431 GST