Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1972 ATGACTTTCACTAATGGCGATGCAGCTGCTGCCTCCCTCAACAAGGTCCCCACGGTCAACTTCACCAAGCTCTTCATTGACGGACACTTCGTTCACTCTGTGTCAGGAAAGACATTTGAGACAATAGATCCAAGAACAGGAGATGTTATAGCGAGGATCAGCGAGGGAGATAAAGAAGACATTGACATTGCTGTTAAAGCAGCACGTCATGCATTTGACAATGGTCCATGGCCTCGCCTTCCCGGCTCTGAGAGAGGAAGAATTTTGCTGAAATGGGCAGAGCTAATAGAGGAAAACGCAGAAGAACTTGCGGCACTAGATGCCATTGATGCGGGGAAGTTGTACCATATGTGTAGGAATTTGGAAGTTCCAGCAGCAGCAAACACTCTTCGTTACTATGCAGGTGCTGCCGATAAGATTCATGGCGAGGTGTTGAAAATGTCCCGAGACTTCCATGCCTATACATTGCTTGAACCACTTGGTGTTGTGGGACACATTACTCCCTGGAATTTCCCCAATACCATGTTCTACATCAAGGTTGCTCCTTCTTTAGCTGCTGGCTGCACCATGGTCCTCAAGCCCGCCGAGCAAACACCCCTCTCTGCTTTGTTTAATGCTCATCTTGCTAAATTGGCTGGAATCCCAGATGGAGTGATCAATGTAGTGCCTGGATTTGGCCCAACTGCTGGTGCTGCATTAAGCTCACACATGGATGTTGATAAGGTTAGCTTTACTGGTTCAACACAAACAGGCCGTGAGATAATGCAGGCTGCAGCTAAGAGTAACTTGAAACAAGTTTCACTTGAATTAGGAGGCAAGTCACCCCTCATAATTTTTGATGATGCTGATATAGACAAAGCTGCTGAGCTAGCTCTACTAGGCATCCTATATAACAAGGGAGAAGTTTGTGTTGCAAGTTCCCGTGTGCTTGTTCAAGAAGGGATCTATGATGAATTTGAGAAAAAACTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGGGATCCCTTTGATCCTAAAGTTCAACAAGGCCCTCAGGTTGACAAGGAACAATTTGAAAAGGTCCTTTCATATATTGAGCATGGAAAGAAAGAAGGAGCTACCCTTTTGACTGGGGGTAAAACAGTGGGAAACAAGGGCTACTTTATTGAGCCAACAATTTTCTCCAATATAAGGGAGGATATGCTTATAGCACAGGATGAAATATTTGGCCCAGTAATGGCACTGAAGAAGTTTAAGACCATTGAGGAAGCAATTAAGAGTGCTAACAATACCAAGTATGGCCTAGCAGCAGGCATAGTGACCAAGAATTTGGATACGGCAAACACAGTGTCAAGGTCCATTCGTGCAGGCACTATTTGGATCAACTGCTATTTTGCCTTTGGCGATGATGTTCCCTTTGGAGGGTATAAGATGAGTGGATTTGGAAAAGATCATGGATTGGAAGCCCTTCACAAGTACCTACAAGTTAAATCTGTTGTTACTCCCCTTTACAATTCACCCTGGCTTTGA 1509 0.4493 MTFTNGDAAAASLNKVPTVNFTKLFIDGHFVHSVSGKTFETIDPRTGDVIARISEGDKEDIDIAVKAARHAFDNGPWPRLPGSERGRILLKWAELIEENAEELAALDAIDAGKLYHMCRNLEVPAAANTLRYYAGAADKIHGEVLKMSRDFHAYTLLEPLGVVGHITPWNFPNTMFYIKVAPSLAAGCTMVLKPAEQTPLSALFNAHLAKLAGIPDGVINVVPGFGPTAGAALSSHMDVDKVSFTGSTQTGREIMQAAAKSNLKQVSLELGGKSPLIIFDDADIDKAAELALLGILYNKGEVCVASSRVLVQEGIYDEFEKKLVEKAKAWVVGDPFDPKVQQGPQVDKEQFEKVLSYIEHGKKEGATLLTGGKTVGNKGYFIEPTIFSNIREDMLIAQDEIFGPVMALKKFKTIEEAIKSANNTKYGLAAGIVTKNLDTANTVSRSIRAGTIWINCYFAFGDDVPFGGYKMSGFGKDHGLEALHKYLQVKSVVTPLYNSPWL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1972 502 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 3 502 - -
Gso5g1972 502 SUPERFAMILY ALDH-like 16 498 IPR016161 GO:0016491
Gso5g1972 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 490 IPR016162 GO:0016491
Gso5g1972 502 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 3 502 - -
Gso5g1972 502 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 272 461 IPR016163 GO:0016620
Gso5g1972 502 Pfam Aldehyde dehydrogenase family 31 492 IPR015590 GO:0016491
Gso5g1972 502 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 268 275 IPR029510 GO:0016491
Gso5g1972 502 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 296 307 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1972 Gso-Chr5 42836529 42841290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1972 5 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.940 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1972 K12355 - gmx:100817721 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1972 5 42836529 42841290 Gso8g0330 8 3093534 3098501 GST
Gso5g1972 5 42836529 42841290 Gso7g0754 7 8184051 8188865 PCT
Gso5g1972 5 42836529 42841290 Gso9g1557 9 39865217 39869381 PCT
Gso7g0754 7 8184051 8188865 Gso5g1972 5 42836529 42841290 PCT
Gso9g1557 9 39865217 39869381 Gso5g1972 5 42836529 42841290 PCT