Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1962 ATGCCTTCTCTCTCCGTCATCCCATCACTCCCATGGCTTCAAAACCCTAAATTGAGCCAACCCAATTTCTTCAATTTCCGCTTACCGCCACTCTGTCACCGTCCCCTCGGCAAAAGCACTGCAACTTTTCACCGTAGAATCCTCTGCAAAGCCCTCAGAGATTCCGGCGAGGACTTCAAGGCGGTGCTCAAGTCCGACGACAGTGGTGGCGGAGGCGGCGGCGACGGTGGGGGTGGGGGTGACCGGGATGCGGAGAAGGAAGAAGGTCCCTTGTCGGAGTGGTTGAATTTCACTTCTGATGACGCAAAAACGGTGCTTGCGGCTCTCGCAATTTCGCTTGCGTTTCGATCATTCGTGGCGGAGCCGAGGTTCATTCCTTCGCTGTCAATGTATCCTACATTGGATGTTGGAGATCAAATTATTGCTGAGAAGGTTTCATACTATTTTAGAAAACCATGTGCAAGTGACATAGTGATATTTAAAAGCCCTCCGGTGCTTCAAGAAGTTGGATACAGCAATTTTGATGTGTTTATAAAGCGTATGGTTGCAAAGGAAGGTGATATTGTGGAGGTTCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAAGAATGAAGAGTACATCCTTGAACCACCTGCTTATGAGATGAAACCCACACGTGTGCCAGAGAACTACGTCTTTGTAATGGGAGACAACCGCAATAACAGCTATGACTCCCATGTGTGGGGTCCCCTGCCAGCCAAGAATATCATAGGTAGATCGGTATTTCGCTATTGGCCACCAAATAGAATTGCTGGCACAGTTTCTAAGGAAAGTTGCAGTGTTGAAACCACGCAGACGCAGGAGAGTGCGGAGACTTCGCTACCATCTCAATGA 876 0.4874 MPSLSVIPSLPWLQNPKLSQPNFFNFRLPPLCHRPLGKSTATFHRRILCKALRDSGEDFKAVLKSDDSGGGGGGDGGGGGDRDAEKEEGPLSEWLNFTSDDAKTVLAALAISLAFRSFVAEPRFIPSLSMYPTLDVGDQIIAEKVSYYFRKPCASDIVIFKSPPVLQEVGYSNFDVFIKRMVAKEGDIVEVRKGHLVVNGVEKNEEYILEPPAYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSKESCSVETTQTQESAETSLPSQ* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1962 291 Pfam Signal peptidase, peptidase S26 102 259 IPR019533 GO:0004252|GO:0006465
Gso5g1962 291 SUPERFAMILY LexA/Signal peptidase 116 265 IPR036286 -
Gso5g1962 291 Gene3D Umud Fragment, subunit A 115 275 - -
Gso5g1962 291 MobiDBLite consensus disorder prediction 62 87 - -
Gso5g1962 291 PANTHER SIGNAL PEPTIDASE I 86 272 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso5g1962 291 TIGRFAM sigpep_I_bact: signal peptidase I 103 261 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso5g1962 291 CDD S26_SPase_I 121 253 IPR019533 GO:0004252|GO:0006465
Gso5g1962 291 ProSitePatterns Signal peptidases I signature 3. 226 239 IPR019758 GO:0004252|GO:0016021
Gso5g1962 291 PRINTS Bacterial leader peptidase 1 (S26A) family signature 118 134 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso5g1962 291 PRINTS Bacterial leader peptidase 1 (S26A) family signature 177 189 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso5g1962 291 PRINTS Bacterial leader peptidase 1 (S26A) family signature 221 240 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso5g1962 291 ProSitePatterns Signal peptidases I serine active site. 127 134 IPR019756 GO:0004252|GO:0016021
Gso5g1962 291 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 86 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1962 Gso-Chr5 42752385 42755835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1962 130 260 MADS-box Gene Family AT1G29960 31.818 2.86e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1962 K03100 - gmx:100785296 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1962 5 42752385 42755835 Gso8g0321 8 3012697 3015302 GST