Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1957 ATGGGGGAAGGTGAAGCTGAGGGGAGTGATGGCGCTCCCAAGAATATTGTGTCAAACGACGTCGTTGCGAATGCCCTGTTGCCGTTCGATGTTCCCGCCAAGAAGCTCGCGCGGCAGCTCGATTTCACCGATTTCGGTGGGATGCCGGCGCCGCCGCAGCCGCCGGTGATTTTGCCACTGCCGCCTTCTGCTTCTGTCAGGGTTGGGAAACCAGAATCTCCTAAATCGAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACCCCGAAGAAGCAGAAGCAGTGCAATTGTAAACATTCAAAATGCCTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGACGGCTGCAACTGTGTAAATTGTTATAACAATGTGGAAAATGAAGCTGCTAGACGAGAAGCAGTTGAAGCTACTTTAGAACGGAATCCAAATGCATTTAGGCCAAAAATAGCGAGTAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAGTTTTGATATTGGGAAAGCATAACAAAGGGTGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCGGCCAATGCTGCCATAACTGGAGCTATCGGTTCCTCTGGCTATTCTTCACCACCAATATCAAAGAAAAGAAAAGGTCAAGAACTGTTATTTGGGCCAACCGTCAAGGATCCATCAGTTGGCAGGCAGGGGCAACAGGCAAACAATGTCAGAGTTCCTGCACCCTCCTCATCCTTGTCACCTATCCCAGGTGCTCGTGTTGGACCAGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGATGTTTACAGACCACAAAAATTTCATGGATAAGCATGCTGAAGATCAGACAGAAACTTCTCGTGCTTCTTCAACTCAGGAGCAATTACCAAGCCAAAAGGAGGCTAATGTTGAGAAAGCTATGGCTGATGATGATTGTTCAAGTGCAAACCAGACAGATAATATCAGCCCGAATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTGATGTGCGATGAGCAAGATACAATGTTCATGACTGCTGCCTCCACTGTCGGGTCAAGGGCACATGCTTGCAACACATCTTTGCAACCGCCTTATGGACAAGTAATGACAGAGGTCTATGCAGAGCAAGAAAGGATTGTATTGACGAAATTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAAACAAAGTGCTCTTCATTAGCCAGAAGTGAATTAGAGAGTCAAAAGGATCCAAACATCAATTGTACTGGAAACGCCAGTACTGAGACACAGCATCAGCAGGGAGCCACTAATAACGGTGTTGCCAAAACGGCGGGCAACTCCATTAATTCTACATCTTTGTTTCCTGGTGGTAGTCTTGTTTCTGAAAATGGTGAAACTTATCCGAAGGTTGAAGAATAG 1686 0.4514 MGEGEAEGSDGAPKNIVSNDVVANALLPFDVPAKKLARQLDFTDFGGMPAPPQPPVILPLPPSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEVLILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGPTVKDPSVGRQGQQANNVRVPAPSSSLSPIPGARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKMFTDHKNFMDKHAEDQTETSRASSTQEQLPSQKEANVEKAMADDDCSSANQTDNISPNNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASTVGSRAHACNTSLQPPYGQVMTEVYAEQERIVLTKFRDFLNRVITMGEINETKCSSLARSELESQKDPNINCTGNASTETQHQQGATNNGVAKTAGNSINSTSLFPGGSLVSENGETYPKVEE* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1957 561 MobiDBLite consensus disorder prediction 389 407 - -
Gso5g1957 561 MobiDBLite consensus disorder prediction 356 413 - -
Gso5g1957 561 MobiDBLite consensus disorder prediction 275 292 - -
Gso5g1957 561 ProSiteProfiles CRC domain profile. 91 215 IPR005172 -
Gso5g1957 561 MobiDBLite consensus disorder prediction 498 561 - -
Gso5g1957 561 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 92 127 IPR005172 -
Gso5g1957 561 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 178 212 IPR005172 -
Gso5g1957 561 MobiDBLite consensus disorder prediction 268 303 - -
Gso5g1957 561 MobiDBLite consensus disorder prediction 363 377 - -
Gso5g1957 561 SMART CXC_2 175 216 IPR033467 -
Gso5g1957 561 SMART CXC_2 90 130 IPR033467 -
Gso5g1957 561 MobiDBLite consensus disorder prediction 61 83 - -
Gso5g1957 561 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 62 533 - -
Gso5g1957 561 PANTHER TESMIN/TSO1-RELATED 62 533 IPR028307 -
Gso5g1957 561 MobiDBLite consensus disorder prediction 498 548 - -
Gso5g1957 561 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1957 Gso-Chr5 42699055 42705543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1957 32 501 CPP Transcription Factor Family AT4G29000 57.061 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gso5g1957 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1957 - - gmx:100786353 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1957 5 42699055 42705543 Gso8g0315 8 2974453 2980584 GST