Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1956 ATGGAGATGGATCCTCCACCGAAGAGCTGGAGCATCCACACCCGATCCGAGATCATCGCAAAATACGAGGTCATGGAGCGGGTCGGGTCGGGAGCCTACGCCGACGTCTACCGTGGCCGTCGCCTCTCCGACGGCCTCACCGTGGCCCTCAAGGAAATCCACGACTACCAGTCCGCCTTCCGAGAAATCGACGCGTTGCAGCTCCTCGAGGGCTCCCCAAACGTCGTGGTTTTGCACGAGTACTTCTGGCGCGAAGACGAGGACGCCGTCCTCGTCCTTGAGTTCCTCAGAACCGACTTGGCCACCGTCATCGCCGACACCGCCAAGGCCAACCAGCCCCTCCCCGCCGGCGAGCTCAAGTGCTGGATGATCCAGATTCTCTCCGGCCTCGACGCCTGTCACCGCCACATGGTCCTCCACCGAGATTTGAAGCCCTCTAATCTCTTAATTTCCGAACACGGCCTCCTCAAGATCGCTGATTTTGGACAGGCAAGAATTCTCATGGAGCCTGGTATTGATGCTTCTAATAATCATGAAGAATATTCTAGAGTTTTAGATGACATTGACAATAAGGATACTATTACTAGCACCCACGATGGGAATGCAACATGCAACACAAGTGACGTAGATAGGGAAGAGGAAGAACTTGGTTGTTTTACGTCATGCGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCAAGAAACTATGGTTTAGAGGTTGATTTGTGGTCCTTGGGATGTATCTTTGCAGAGCTTTTAACGCTGCAACCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTTAGTAGAATCATTGGTGTTTTGGGTAACCTTGATGAGAATGCTTGGGCTGCTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTCTTGAAGCTTGTTTGCCCAATCGGTCCCCTGATGAAGTGGCTCTGGTGAAAAAACTGGTTTGTTATGATCCTGCCAAGAGGGCCACGGCGATGGAGCTGCTTCATGACAAGTACTTTAGTGATGAGCCTCTTCCTGTTCTGGTTTCTGAGCTGCGAGTTCCTCTGACCAGAAAAGAGCAAGATGGGGATTCCCCTGGTGGGTGGGGTGATATCAACGATATGGATTCCGATTCCGATTCCCAGTTTGATGAGTTTGGCCCTCTGAATATCACAAGGACTGGTACTGGTTTCTCCATACAGTTTCCTTGA 1236 0.5097 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALQLLEGSPNVVVLHEYFWREDEDAVLVLEFLRTDLATVIADTAKANQPLPAGELKCWMIQILSGLDACHRHMVLHRDLKPSNLLISEHGLLKIADFGQARILMEPGIDASNNHEEYSRVLDDIDNKDTITSTHDGNATCNTSDVDREEEELGCFTSCVGTRWFRAPELLYGSRNYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIIGVLGNLDENAWAACSKLPDYGIISFSKVENPAGLEACLPNRSPDEVALVKKLVCYDPAKRATAMELLHDKYFSDEPLPVLVSELRVPLTRKEQDGDSPGGWGDINDMDSDSDSQFDEFGPLNITRTGTGFSIQFP* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1956 411 Gene3D Transferase(Phosphotransferase) domain 1 109 351 - -
Gso5g1956 411 ProSiteProfiles Protein kinase domain profile. 22 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1956 411 Pfam Protein kinase domain 22 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1956 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gso5g1956 411 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Gso5g1956 411 SUPERFAMILY Protein kinase-like (PK-like) 15 354 IPR011009 -
Gso5g1956 411 MobiDBLite consensus disorder prediction 391 411 - -
Gso5g1956 411 MobiDBLite consensus disorder prediction 364 411 - -
Gso5g1956 411 PANTHER CELL DIVISION PROTEIN KINASE 13 358 - -
Gso5g1956 411 SMART serkin_6 22 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1956 411 PANTHER CYCLIN-DEPENDENT KINASE 10 13 358 - -
Gso5g1956 411 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1956 Gso-Chr5 42693102 42694931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1956 6 411 Core Cell Cycle Gene Families AT4G28980 56.184 0.0 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Gso5g1956 Pkinase 4.6e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1956 - - gmx:100776564 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1956 5 42693102 42694931 Gso8g0314 8 2968492 2972139 GST
Gso5g1956 5 42693102 42694931 Gso7g0726 7 7887661 7890643 PCT
Gso5g1956 5 42693102 42694931 Gso9g1584 9 40146503 40148375 PCT
Gso7g0726 7 7887661 7890643 Gso5g1956 5 42693102 42694931 PCT
Gso9g1584 9 40146503 40148375 Gso5g1956 5 42693102 42694931 PCT