Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1953 ATGGCAAGAGCAAAACAAGGGTCACATTGGTCATTTCAGAAACTGCCGTCCGAGTCTTCTAATTCCGGCAAGTTGAATCCAATCACCGTAACTTCATATTCATATACCCCCCGAACGGACCAAAGTTTCACTCACTCTCCCGCCACCATGACCACCGTAACGGTCACGACTCGAGCTCAGATCCTCCGCCACACCGCCGCATTCACCTCCTCCGTCCTCTCGCAATCCGAACTCCGGCGCCGCCTCATCGCCACTCTCCTCCGCGACACCCCACTCTCCGACCAAAAACACCTAAACCTCGCCGCAGACACTCTAGAGAGCGCGATCTCGTTCTCGAGCCCCCCCACCCGCTCCTCGTCCCTCTCTCTCGCCGAGAAGCTCCTCCTCCCTCTCCCGGACTTCCCCCTCTCCTCGCTCCTCCTTTCTCTCATCCACGCCCTTCGTAGTCGCCCTACCGAATCCGCCGTTAGCCTCCTCCGAATATTCCACTCCAACAATAACGCTTCCCTCGCTCGTTCCGAAATCGCTCCTGCGCTCTACGAGTGCCTTTTCTCTCTCCACCTCTTCCCCGTCTTCCGCTGGTTCGATGACCAGAGGACGCGGATTCTCTCCTCGAGCCGTAACGATGACGATTACATTTATTCGGTAACTTCGGAGGAGTACTCCGTGTTGCTGCCTTGCGCGAAGGTGTTGTCGAAGATGAGCGAGGAGCAGGCCGCGAAGCTCAGGGAGGTGGAGAGAGAGTACGAAGATGTTCTCAACCAGAACTGCATGGTTCTCGCCGAGTATTTCAAAGAGGTTTTGGTCAACGAAAACGGTGACGCTGCTGTGGTCAGTCCACCGTCGTTGGTACTTAAGAGCGCCGCTGAAGATGGCCACGGCGGCGGGGAGATCAGAAAGGAGGAGATGATGCAAATGAACGTGTTGGAGAACGGACGGTATAATAATCCAATATGGTCCGAAAGGGAAGCATCTATTGAATTTTTGAGCCCCAGTACCAGCAGCAGATCTTCCCAAGCGCCATTTTATCCTCAAAGAGTCTTGTCCAGAATCCTCAAGCCCCAAAAAGCTTCAAAAACTTGGACAACGCCAGTCTATTTAAACTCAACCGCTGATACTGATTTTTCTTTAGATGAGAGTTTGCTTAGTTCTTCTTCAGATTCTGAGGCAGAAAATGACGAGGAAAAGGACAAAACTGTTGCATTGTTGGAGCCTCGACAAAGCCAAATTAAGGAACAAATGCCAACTATCTTCAAACAATCAAGAGGTTCCCCAGATTATCCAATGGCAGACTTGGATACCCCGCTGCATGGAATTGGGAAGCATGCACATCCCAAGGACTTTGTCTGTCCAATAACAAGTTACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGAAACTTAACCTGTCCCATCACACGCCAGAAGCTGCAAAACACCCAGCTACCCAAAACAAATTACGTGCTCAAACGACTAATTGCGAGCTGGAAAGATCGCAACCCCCATTTGGTCCCACCATCGTATGAGATTCCGTACGAAGAAACCGAGGAAGCTGTGAAGCTAACAATCCCTTCAACTTCTCCTAATAGCGTTATAACGCAAGCCACGGTAGATGGGATGATGAGTGAGTTACGCTGTGCAATCAATAACCTTTATATGTCAGAGGTTCTCCAGGAATCTGAAATGGCCGTGCTTCAAATTGAAAAGTTCTGGAGAGGAGTGAATGTGGGAGTGGATATACATAGCATGCTATCGAAACCTGCGATAATCAATGGATTTATGGAGATCCTTTTCAATTCTGTTGAGCCCCAGGTGCTTCAAGCATCAGTTTTCCTTTTGGCGGAGATGGGGTCCAGAGACAATGCTGTTATTAAGACTCTCACACGTGTGGACTCTGACGTGGAATGTATCATGGCTCTTTTCAAGAACGGGTTGACAGAGGCTGTTGTGCTGTTGTATCTGCTAAACCCTTCCACTGTGAATCTTGCAGAGATGGCAATAGTGGAGTCTCTAATAACAGTTTTCAATAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTGAAGCCCAAAACAGCTGCAGTGCTTTTACTTGCACGGATTATTGGAAGCAGTGAAGAGATAATTTCATCTTCGGTTGTCAATACCCTTTTCTCTGAAAAAGCAATAGGAACTATTGTCGGCAGTTTGGGAGCTAACTTGGCAAAGGAGAGGATTGCTGCAGTGGAGATCTTGTTGAGATGCATGGAAGAAGATGGCACTAGCAGGAACAACATTGCTGATAAAGCAGAGCTGACACCTCTTTTGGAAACCTTAATCGGTGCAACTGATGGAGATCGATTTAAGATTATTCAGTTTTTCTCTGAGTTAGTCAAATTAAATAGGCGGACATTCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTTCTTATTTATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTTATGGCTGGCCTCTTACTCCAACTCGATCTTCTGGTTGAGCCAAGAAAAATGAGCATATACCGGGAAGAGGCTATGGATACTCTTATTTCATGCCTGAGAAACGCAGATTTCCCCGTTACCCAATTAGCAGCTGCTGATACAGTTATTTCACTGCAAGGGAGTTTTGACTTCTCTGGAAACCCTCTAACCAGAGAAGTCCTTCTTAAACGTGCAGGTATCGAGAAAAGTTCCAGAAGTCTTGTACAGGTGAATCAGATCAGCAACTTCAGCCCAGAAATAGATATAACTCCAGAAGAAGAGAAGGCAGCTGATGATTGGGAAAGAAGAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGCACTCTTTTCGAGGCTTTAGCAGATGGCATGAAGAGCCGAAATCCAGAACTACGATCAGCATGCTTTATATCAGCTACATGGCTCATATACATGTTGACCATTCTACCAGATACAGGGATACAAGTAGCAGCTCGAGCCTGCTTGCTGAAGCAGTTCATAGCTAAATTAAATTCTACTAAGGATGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGACGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCATAAAAGGGTTGAGAGAGCTAAAGAGATCCTATCCTCTAGCAACTAAAATGCTAAAGGTTCTGGTTGAAGAAAATGAATCTAAAGCGGACATTTGGATACATACACAGCTCATAAAAGAAGACTGTAGCGAGAATGGAGAGGTTCTGTCTGTCATTTGCTTTAAGGATAAATTTTTTTCTGGACATACAGATGGCACTATTAAGGTCTGGACATTAAAGGATAACTTATTCTATCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAACTTGGTGATTTTAGAATCTGATGACAGACTATACAGTGGTTCACTTGACCGAACTGCAAAGGTCTGGTCTATTGGAAAGGCAGCAATACATTGTGTGCAGGTGCATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCTTAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCAGTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAGTAAATATGTGAAGTGCTTGGCTCATGTTCATGGGAAATTATACTGTGGATGCCATGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTTAACACTATTCAAAGTGGTTATAAAAGATTACTTGGGAAAGCAAATCCTATTCGTGCACTGCAAATTCATGGTGAACTTGTATATGCAGCTGGCTCTAACTTGGATGGATCCGCTATAAAGATATGGAACAATTCCAATTACAGTATGGTTGGATCTCTACAAACTGGATCTGATGTGCGGGCCATGGCAGTGAGCTCAGAATTGATTTATTTGGGGTGCAAAGGAGGTACATTGGAAATTTGGGATAAGAAAAAACACAATAGAGTTGACACGTTGCAAATGGGTACGAATTGTAGGGTTAATTGCATGGCTCTAGACGGCAATGGAGAAGTTTTGGTAATTGGAACTTCAGATGGACAGATTCAGGCTTGGGGAATGAATTAA 4155 0.4493 MARAKQGSHWSFQKLPSESSNSGKLNPITVTSYSYTPRTDQSFTHSPATMTTVTVTTRAQILRHTAAFTSSVLSQSELRRRLIATLLRDTPLSDQKHLNLAADTLESAISFSSPPTRSSSLSLAEKLLLPLPDFPLSSLLLSLIHALRSRPTESAVSLLRIFHSNNNASLARSEIAPALYECLFSLHLFPVFRWFDDQRTRILSSSRNDDDYIYSVTSEEYSVLLPCAKVLSKMSEEQAAKLREVEREYEDVLNQNCMVLAEYFKEVLVNENGDAAVVSPPSLVLKSAAEDGHGGGEIRKEEMMQMNVLENGRYNNPIWSEREASIEFLSPSTSSRSSQAPFYPQRVLSRILKPQKASKTWTTPVYLNSTADTDFSLDESLLSSSSDSEAENDEEKDKTVALLEPRQSQIKEQMPTIFKQSRGSPDYPMADLDTPLHGIGKHAHPKDFVCPITSYIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVPPSYEIPYEETEEAVKLTIPSTSPNSVITQATVDGMMSELRCAINNLYMSEVLQESEMAVLQIEKFWRGVNVGVDIHSMLSKPAIINGFMEILFNSVEPQVLQASVFLLAEMGSRDNAVIKTLTRVDSDVECIMALFKNGLTEAVVLLYLLNPSTVNLAEMAIVESLITVFNKKEEDLVKMCLKPKTAAVLLLARIIGSSEEIISSSVVNTLFSEKAIGTIVGSLGANLAKERIAAVEILLRCMEEDGTSRNNIADKAELTPLLETLIGATDGDRFKIIQFFSELVKLNRRTFNEQILHIIKEEGPFSTMHTLLIYLQTALQDQCPVMAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNADFPVTQLAAADTVISLQGSFDFSGNPLTREVLLKRAGIEKSSRSLVQVNQISNFSPEIDITPEEEKAADDWERRIASVLVSHEFGTLFEALADGMKSRNPELRSACFISATWLIYMLTILPDTGIQVAARACLLKQFIAKLNSTKDVEDRILSMLALNSFLHFSDGLGDLTSYTKDIIKGLRELKRSYPLATKMLKVLVEENESKADIWIHTQLIKEDCSENGEVLSVICFKDKFFSGHTDGTIKVWTLKDNLFYLLQEIQEHTKAVTNLVILESDDRLYSGSLDRTAKVWSIGKAAIHCVQVHDMKDQIHNLVVTNSLACFIPQGTGVKVQSLNGESKLLNSSKYVKCLAHVHGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLGKANPIRALQIHGELVYAAGSNLDGSAIKIWNNSNYSMVGSLQTGSDVRAMAVSSELIYLGCKGGTLEIWDKKKHNRVDTLQMGTNCRVNCMALDGNGEVLVIGTSDGQIQAWGMN* 1385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1953 1384 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 56 1383 - -
Gso5g1953 1384 Gene3D - 1089 1204 IPR015943 GO:0005515
Gso5g1953 1384 MobiDBLite consensus disorder prediction 379 398 - -
Gso5g1953 1384 ProSiteProfiles U-box domain profile. 443 518 IPR003613 GO:0004842|GO:0016567
Gso5g1953 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 1141 1174 IPR001680 GO:0005515
Gso5g1953 1384 MobiDBLite consensus disorder prediction 10 27 - -
Gso5g1953 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1141 1174 - -
Gso5g1953 1384 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 56 1383 - -
Gso5g1953 1384 SMART Ubox_2 447 511 IPR003613 GO:0004842|GO:0016567
Gso5g1953 1384 Gene3D - 1206 1384 IPR015943 GO:0005515
Gso5g1953 1384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 519 IPR013083 -
Gso5g1953 1384 MobiDBLite consensus disorder prediction 1 27 - -
Gso5g1953 1384 Pfam U-box domain 445 515 IPR003613 GO:0004842|GO:0016567
Gso5g1953 1384 Coils Coil 746 766 - -
Gso5g1953 1384 SUPERFAMILY ARM repeat 88 1071 IPR016024 -
Gso5g1953 1384 CDD RING-Ubox_PUB 448 490 IPR045210 -
Gso5g1953 1384 ProSiteProfiles Trp-Asp (WD) repeats profile. 1350 1384 IPR001680 GO:0005515
Gso5g1953 1384 SUPERFAMILY WD40 repeat-like 1113 1383 IPR036322 GO:0005515
Gso5g1953 1384 Coils Coil 228 255 - -
Gso5g1953 1384 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1350 1384 - -
Gso5g1953 1384 SUPERFAMILY RING/U-box 443 519 - -
Gso5g1953 1384 SMART WD40_4 1208 1251 IPR001680 GO:0005515
Gso5g1953 1384 SMART WD40_4 1092 1129 IPR001680 GO:0005515
Gso5g1953 1384 SMART WD40_4 1134 1173 IPR001680 GO:0005515
Gso5g1953 1384 SMART WD40_4 1303 1339 IPR001680 GO:0005515
Gso5g1953 1384 SMART WD40_4 1260 1300 IPR001680 GO:0005515
Gso5g1953 1384 SMART WD40_4 1342 1382 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1953 Gso-Chr5 42663988 42671670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1953 445 532 U-box Gene Family AT5G42340 43.182 6.41e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1953 - - gmx:100808867 2324.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1953 5 42663988 42671670 Gso8g0312 8 2953541 2961085 GST