Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1952 ATGAATAGAGGTGTTTTGCAAAGCTCACCGGTGAAACAAATGATGGCCGGGAACCCTAACAATTGGTGGAACATCAACACCATGCGCCCTCCTCCTCCTCCTCCACAAGCTTCTCCTCCTTTCTTCTCCACTCCTTCCAACTTTCTAACTCCTTATTATACCCCCACTTCTTCTCTTCCTCTTCCTTCTTGGCATGACAACAATCAAGAGCTACCTGAGTCATGGAGCCAACTACTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGGTATGTGCCAGGTTCAGTCTAAGAAGTTGGAGAACTGGGAGCAACAAATGCTAAGCCAGGCTCCAAGTGCTCCTATTGTTGATGTTAAGCAAGAAAGCTCGGTGAACAGCTATGCGTATGGGCATGGAAACGAAGAGTTTCAACCAGCAAAGCCAACATGGTCTCAAATAGTGCCTGCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTGGATTTCTCTAACAATAACACCGATGCGAGGCCTCCTCCACCAGATCCATCCTCAGAGTGTGATAGCGCTGCAACTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAATCGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACCGCCCTTCATCAACTCGTTTCCCCATTCGGAAAGACTGACACGGCTTCTGTCTTATTAGAAGCTATTGGCTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCAGCAACAATCCGTAAGAAATAATACCAACCCACCATTTCTGGTTCAAGGAGAGAACAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAATGAAAACTGTTTGAAGAGGAAAGCAGCTAGTGAGCAGGATTCTCAAGAAGAACAAAAGAAAGACCTGAGGAGTAGAGGGTTATGCTTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGACTATTGGGCTCCTGCTTTTGGTGGGGGATTTCGGTAG 1071 0.4697 MNRGVLQSSPVKQMMAGNPNNWWNINTMRPPPPPPQASPPFFSTPSNFLTPYYTPTSSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGGMCQVQSKKLENWEQQMLSQAPSAPIVDVKQESSVNSYAYGHGNEEFQPAKPTWSQIVPASSPKSCVTSFSSSMLDFSNNNTDARPPPPDPSSECDSAATGGAFKKARVQPPTTQSTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRQQQSVRNNTNPPFLVQGENNCIFPEDPGQLLNENCLKRKAASEQDSQEEQKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1952 356 Gene3D - 207 260 IPR036638 GO:0046983
Gso5g1952 356 PANTHER OS05G0228400 PROTEIN 17 342 - -
Gso5g1952 356 CDD bHLH_AtbHLH_like 207 256 IPR045239 -
Gso5g1952 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 259 IPR036638 GO:0046983
Gso5g1952 356 Coils Coil 305 325 - -
Gso5g1952 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 248 IPR011598 GO:0046983
Gso5g1952 356 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 342 - -
Gso5g1952 356 MobiDBLite consensus disorder prediction 167 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1952 Gso-Chr5 42650084 42654023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1952 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.000 1.43e-69 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1952 - - gmx:100777095 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1952 5 42650084 42654023 Gso8g0311 8 2939768 2943723 GST