Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1950 ATGTCTGAGGCATTGGAAGATGTTCCTTCAATGAAAGGAGGGTGTGAAGAAGAAGAAGAAGGGTTGAACCTGAAGGCTACTGAGCTGAGGCTTGGGTTACCAGGGTGTGAGTCACCAGAGAGGGAGGGTGCGTTTAGGAGTGTGGTGGTGTCTGGGGCCAAGAGGGGTTTCTCTGATGCCATTGATGAAAACTGGAATGGTGGATCTGAAAAAGATGCTGCCTTGTTTTCTCCAAGGGGTGCTGTTAGTGTTAGTGCTGCCAAGTCTCTCACTCTCACTGCAACAGACTGCACCAACCAACCAACTGCTTTGGGTGCTTCTGTTCTCAAGGAAACTGTTCCACGCTCTCCAAAACCATTGCATGAGAAAAAGCCCCAGATTTCTGCTCCAGCTGCTAAGGCGCAGGTTGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTTCTCAGCCTCTAAAGAATGATACTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTTAAAGTCAGCATGGAAGGCGCCCCATACTTGAGGAAAGTGGATCTGAATAGTTTTACCACTTACAAGGACCTCTCTTTGGCACTTGAAAAGATGTTTAGTTGTTTTACACTCAGTCAATGTGGCTCTTATGGGGTTTCTAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTTCTTACCTATGAAGACAAGGACGGAGATTGGATGCTAGTTGGTGATGTTCCGTGGGAGATGTTCACTGAGTCTTGCAAGAGGCTGAGGATAATGAAGAGTTTTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGTAACTAG 864 0.463 MSEALEDVPSMKGGCEEEEEGLNLKATELRLGLPGCESPEREGAFRSVVVSGAKRGFSDAIDENWNGGSEKDAALFSPRGAVSVSAAKSLTLTATDCTNQPTALGASVLKETVPRSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMASQPLKNDTDAEAKSGCLYVKVSMEGAPYLRKVDLNSFTTYKDLSLALEKMFSCFTLSQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSFEAIGLAPRAMEKCKSRN* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1950 287 Gene3D - 161 280 - -
Gso5g1950 287 MobiDBLite consensus disorder prediction 1 20 - -
Gso5g1950 287 SUPERFAMILY CAD & PB1 domains 162 268 - -
Gso5g1950 287 Pfam AUX/IAA family 27 278 IPR033389 -
Gso5g1950 287 ProSiteProfiles PB1 domain profile. 167 269 IPR000270 GO:0005515
Gso5g1950 287 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 280 IPR003311 GO:0005634|GO:0006355
Gso5g1950 287 PANTHER AUXIN-INDUCED PROTEIN 8 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1950 Gso-Chr5 42608448 42611446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1950 171 277 B3 DNA Binding Superfamily AT4G23980 29.907 4.24e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso5g1950 AUX_IAA 2.8e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1950 K14484 - gmx:100778529 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1950 5 42608448 42611446 Gso8g0309 8 2891192 2894181 GST
Gso5g1950 5 42608448 42611446 Gso9g1589 9 40184456 40187981 PCT
Gso9g1589 9 40184456 40187981 Gso5g1950 5 42608448 42611446 PCT