Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1945 ATGGAACGCATCGTTGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGTGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGATACCTTCGAGATCGTCGCCGTCAAGATCGAGAATAGTAAAACAAAACATCCACAACTGCTTTACGAGGCAAAGCTATACAATATTCTTCAAGGAGGAAGTGGCATTCCGAACATAAAATGGTCTGGCATAGACGGGGAGGATAATGTGCTTGTTATTGATTTGCTTGGGCCGAGTCTTGAGGATCTCTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACAGTATTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAAGGATTTTTACACAGGGATATTAAACCTGATAACTTTCTCATGGGACTTGGTCGAAAGGCCAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATCGGGATTCCACTACCAATCGCCACATCCCTTACAGGGAGAACAAAAACTTAACGGGTACTGCTCGATATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGCCGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTAAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCGGCTACAAAGAAACAGAAGTATGATAAAATATGCCAGAAGAAATTATCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCTTTGACATTTGATCAACGACCTGATTATGGTTTCTTGAAGCGCCTATTTCGGGACCTATTTGCTCGTGATGGTTATGATTTTGATTACGTTTTTGATTGGACCATTTTGAAGTACCAGCAATCTCAAAAGAATGTAATGCTCCCTCCATTATCTCCAGTTCCAGGAGCAAGTAACAGTCGTGCAATTCCAATGGATATTGACAATCATCAAGGTCTTAATTCATATTCAGGGCATGTTAAAGAGCGTATTAGAGCTGGTGATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCAGTGGGTAAAAATTTGAGTTATGAGAAACCACTTGACAAAAATATTTTTGGAGAAGCAAATATTCCCTCTACTTCATTTTCTCCTGCTAGTACTTCACAAAGGAACTCCTTGAAGCAATCCTTGTCTGCTGAAGCTTCCAACCCTGGACATGCACAAGGCAGTAAAATTGGCCCTTCAAGTAGCTTGATGTCATCTCTGCAGCACATGTCTTCTGCTAAATGA 1293 0.413 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPNIKWSGIDGEDNVLVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFARDGYDFDYVFDWTILKYQQSQKNVMLPPLSPVPGASNSRAIPMDIDNHQGLNSYSGHVKERIRAGDATGSGVKIQFKSPVGKNLSYEKPLDKNIFGEANIPSTSFSPASTSQRNSLKQSLSAEASNPGHAQGSKIGPSSSLMSSLQHMSSAK* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1945 430 MobiDBLite consensus disorder prediction 380 430 - -
Gso5g1945 430 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1945 430 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Gso5g1945 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso5g1945 430 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1945 430 PANTHER CASEIN KINASE-RELATED 1 414 - -
Gso5g1945 430 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Gso5g1945 430 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 414 - -
Gso5g1945 430 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso5g1945 430 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1945 430 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1945 Gso-Chr5 42577677 42581702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1945 9 234 EF-hand Containing Proteins AT4G23650 28.879 9.95e-15 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso5g1945 Pkinase 1.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1945 K08960 - gmx:100779936 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1945 5 42577677 42581702 Gso8g0303 8 2851561 2855567 GST
Gso5g1945 5 42577677 42581702 Gso9g1595 9 40245580 40249585 PCT
Gso9g1595 9 40245580 40249585 Gso5g1945 5 42577677 42581702 PCT