Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1944 ATGGTATTGGTGAGAGTGGTTCCCATGGCTTCTTCTTCTTCGATTCGACCCACTCTCTCCTCCCTTAGATTCTTAACACCGTCATCTCTTTCGCTCTCCAACCCTTCTTCTCGTATCTCTTTCTCCCATCTTCCCTCTCCCTCTGTGTCTCAATCCAATAGTTTTGGCCTCAAAGCTTCCAGAGAGTTGAGACAACATGGCAACTCCACGAGAATCATGGCATCAGGGCACGTGTCTCAATCGATTTCAGCTGCTTCACCAGAAAATGTGCTTGAGTGGGTCAAACAGGACAAGCGAAGAATGCTTCATGTTGTATATCGTGTTGGGGACTTGGACAGGACCATAAAGTTTTATACAGAGTGCCTAGGAATGAAGCTCCTCAGAAAGAGGGACATACCAGAGGAGAAATATACTAATGCCTTTCTTGGATATGGGCCCGAAGACTCACACTTTGTTATTGAACTGACATACAATTATGGAGTTGACAAGTATGATATCGGAACTGGATTTGGCCATTTTGGTATAGCTGTTGATGATGTTGCAAAAGCAGTGGAACTAATCAGAGCTAAGGGTGGCAAAATAACTAGGGAGCCTGGTCCTGTCAAGGGAGGGCGTTCAGTAATTGCATTTATTGAAGATCCTGATGGTTACAAATTTGAACTTATAGAAAGAGGTCCCACTCCTGAACCCTTGTGCCAAGTAATGCTTCGAGTGGGTGATCTTAATCGTTCCATAGAATTTTATGAGAAGGCATTTGGTATGGAGCTGCTTCGTACACGAGACAATCCAGAATACAAGTACACCATAGCAATGCTGGGTTATGGTCCAGAAGATAAAAGCACTGTTCTGGAGTTGACTTACAATTATGGAGTCACTGAATATGATAAAGGAAATGCTTATGCTCAGATTGCAGTAGGCACAGATGATGTGTACAAAACTGCAGAAGCAATTAAACTAGCTGGAGGAAAGATTACTCGGGAACCTGGAGCATTACCTGGTATCAACACAAAAATTACTGCATGCTTGGATCCAGATGGCTGGAAGTCGGTTTTTGTAGATAATGTTGATTTTCTAAAGGAGTTGGAGTAG 1089 0.4316 MVLVRVVPMASSSSIRPTLSSLRFLTPSSLSLSNPSSRISFSHLPSPSVSQSNSFGLKASRELRQHGNSTRIMASGHVSQSISAASPENVLEWVKQDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSHFVIELTYNYGVDKYDIGTGFGHFGIAVDDVAKAVELIRAKGGKITREPGPVKGGRSVIAFIEDPDGYKFELIERGPTPEPLCQVMLRVGDLNRSIEFYEKAFGMELLRTRDNPEYKYTIAMLGYGPEDKSTVLELTYNYGVTEYDKGNAYAQIAVGTDDVYKTAEAIKLAGGKITREPGALPGINTKITACLDPDGWKSVFVDNVDFLKELE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1944 362 Gene3D - 73 225 IPR029068 -
Gso5g1944 362 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 100 224 IPR037523 -
Gso5g1944 362 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 230 354 IPR037523 -
Gso5g1944 362 CDD GlxI_Ni 231 352 - -
Gso5g1944 362 Gene3D - 227 362 IPR029068 -
Gso5g1944 362 PANTHER LACTOYLGLUTATHIONE LYASE, CHLOROPLASTIC-RELATED 27 362 - -
Gso5g1944 362 ProSitePatterns Glyoxalase I signature 1. 233 254 IPR018146 GO:0004462|GO:0046872
Gso5g1944 362 ProSitePatterns Glyoxalase I signature 2. 167 179 IPR018146 GO:0004462|GO:0046872
Gso5g1944 362 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 101 221 IPR004360 -
Gso5g1944 362 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 233 348 IPR004360 -
Gso5g1944 362 CDD GlxI_Ni 101 222 - -
Gso5g1944 362 TIGRFAM glyox_I: lactoylglutathione lyase 231 354 IPR004361 GO:0004462|GO:0046872
Gso5g1944 362 TIGRFAM glyox_I: lactoylglutathione lyase 88 233 IPR004361 GO:0004462|GO:0046872
Gso5g1944 362 ProSitePatterns Glyoxalase I signature 1. 103 124 IPR018146 GO:0004462|GO:0046872
Gso5g1944 362 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 99 229 IPR029068 -
Gso5g1944 362 PANTHER LACTOYLGLUTATHIONE LYASE 27 362 - -
Gso5g1944 362 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 231 352 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1944 Gso-Chr5 42562740 42567948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1944 233 351 Calmodulin-binding Proteins AT1G08110 28.966 6.79e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1944 K01759 - gmx:100780463 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1944 5 42562740 42567948 Gso8g0301 8 2834931 2841284 GST
Gso5g1944 5 42562740 42567948 Gso9g1597 9 40256545 40260272 PCT
Gso9g1597 9 40256545 40260272 Gso5g1944 5 42562740 42567948 PCT