Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1940 ATGGCTGAGCTACCTAGCTCAGAAGCATCATCATCAGCTTCCACTCGCAAGCACTCGCATTCCGTCTACAGAGGGGTCCGAATGCGGGCCTGGGGGAAGTGGGTATCCGAAATCCGCGAGCCCAGAAAGAAGAACCGGATCTGGCTCGGCACCTTTGCCACCGCCGAGATGGCCGCGCGTGCACACGACGTCGCGGCGCTCGCCATCAAAGGCAACTCCGCCATTCTCAACTTCCCCGAACTCGCCTCCTCCCTGCCCCGACCCGACTCCAACTCGCCAAGAGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAGGTTAACGATGCTCCGACGACGCCAACTTCGTCGTCGTCGGCGTCACTGTCGCAGTCGTCATCTTGGTCGTCATTGGCGGTTAGTTCTTCCTCCGGCGAAGACCCGTCGACGCCGGAGGAGCTTGGGGAGATAGTGGAGCTGCCGAGTCTGGGGACGAGTTTTGAAATACCCGACCCGAGTGGGGAGTTGGTATTTTTCGACCCGTGGCCGTATTCTCAGGCGTGGAGTCACGGCATTTATGATGAGAGTGAGAGTTATTTTTTGGGGATCAGATTTCAATGCAGGCTCAGAGACAGAGAGCATGGTTCTTTGTGGCTTTGCCTTTGA 648 0.5864 MAELPSSEASSSASTRKHSHSVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALAIKGNSAILNFPELASSLPRPDSNSPRDVQAAAAKAAAMEVNDAPTTPTSSSSASLSQSSSWSSLAVSSSSGEDPSTPEELGEIVELPSLGTSFEIPDPSGELVFFDPWPYSQAWSHGIYDESESYFLGIRFQCRLRDREHGSLWLCL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1940 215 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Gso5g1940 215 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Gso5g1940 215 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gso5g1940 215 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Gso5g1940 215 MobiDBLite consensus disorder prediction 85 124 - -
Gso5g1940 215 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Gso5g1940 215 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Gso5g1940 215 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 13 194 - -
Gso5g1940 215 MobiDBLite consensus disorder prediction 1 19 - -
Gso5g1940 215 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Gso5g1940 215 MobiDBLite consensus disorder prediction 110 124 - -
Gso5g1940 215 MobiDBLite consensus disorder prediction 1 22 - -
Gso5g1940 215 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Gso5g1940 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1940 Gso-Chr5 42538695 42539704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1940 7 186 AP2-EREBP Transcription Factor Family AT5G11590 56.477 4.07e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g1940 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1940 K09286 - gmx:100527241 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1940 5 42538695 42539704 Gso8g0298 8 2793630 2795001 GST
Gso5g1940 5 42538695 42539704 Gso9g1604 9 40331491 40333082 PCT
Gso9g1604 9 40331491 40333082 Gso5g1940 5 42538695 42539704 PCT