Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1935 ATGGGTCGTCGTAAGATTGAGATTACGGAGGTGAAGGACTCCAACACCAAGCAAGTTACATTTTCCAAGCGTCGGACAGGTTTGTTCAAAAAAGCGAATGAATTATCCATTTTGTGTGGAGCAGAAGTTGCTATTGTTGTATTCTCTCCTGGGAACAACCCTTACTCTTTTGGGCACCCAAGTGTTGATGTCGTTGTAGACAAGTTCCTTAAACAAGAGCCGAAATCAAATGTTGTCCAAGGAACATCTAATGAAGCTGGTGACATTGATAGGCTGAATCAACAACTATCTAATGTTGAAGATCAAATACGCGAGGAACAAAAGAAGGCTGCAGAACTCAACGAGAGAATGAAACAAAAAGGAGTGACACAACCTTTTCAAAACAAAGAATGGCAAGGTTCATATTTAGAGATCCAAAAGATGAAGGACTATTTTGATGCAATCGAGGTGTCAAATTATATGTTGCTCCTTGCAAAAGAACCAGTAGTTGGAATAACCAAACAAGTTGCTACTAAGAAAAGAAGAAGGAATTGA 534 0.3933 MGRRKIEITEVKDSNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNNPYSFGHPSVDVVVDKFLKQEPKSNVVQGTSNEAGDIDRLNQQLSNVEDQIREEQKKAAELNERMKQKGVTQPFQNKEWQGSYLEIQKMKDYFDAIEVSNYMLLLAKEPVVGITKQVATKKRRRN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1935 177 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Gso5g1935 177 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Gso5g1935 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gso5g1935 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso5g1935 177 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Gso5g1935 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso5g1935 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso5g1935 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso5g1935 177 Coils Coil 89 123 - -
Gso5g1935 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 169 - -
Gso5g1935 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso5g1935 177 PANTHER MADS BOX PROTEIN 2 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1935 Gso-Chr5 42483222 42483877 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1935 1 121 Type I MADS-box Gene Family AT2G34440 43.200 1.74e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso5g1935 SRF-TF 4.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1935 - - gmx:100790601 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1935 5 42483222 42483877 Gso8g0292 8 2732331 2733160 GST