Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1934 ATGGGTCGTCGTAAGATTGAAATTGCGACATTGAAAGACCCTAATACGAGGCAAGTCACATTTTCCAAGCGTCGAACGGGCTTATTCAAAAAGGCAAATGAATTATCCATCTTGTGCGGCGCAGAAATTGCTATTGTTGTGTTCTCCATTGGAAACAAGCCTTACTCTTTTGGGCACCCAGGTGTTGATGTTATTGCGGCCAAGTTTCTTCAAGAAGCGGCTAATTCAAGCGATGCCAAACAAATTGATGCCCAAGGAAACAACCCATCTAATGAACTTGGTGACATGAATAGGCTGAATCAACAATTGTCTGATGTTCAAACCCAAATACTCGAGGAAGAAAAGAAGGGCGCGGAACATGATGAGAGACTAAAACAACACCAGGTCACACAACTCTCTCAGTATAAGGAACTGCAAGCTTCATATTTAGAGCTCCAACATAGAGTGAAGGACTATGTCAACGCCATCGAGGTGTCGGAGTGTATGATACTCCTTGCACAAGAACCGGTGGTTGGAATAACAAAACAAATGACTGCTACAAAGAGGAGAAAAAAGAATTGA 561 0.426 MGRRKIEIATLKDPNTRQVTFSKRRTGLFKKANELSILCGAEIAIVVFSIGNKPYSFGHPGVDVIAAKFLQEAANSSDAKQIDAQGNNPSNELGDMNRLNQQLSDVQTQILEEEKKGAEHDERLKQHQVTQLSQYKELQASYLELQHRVKDYVNAIEVSECMILLAQEPVVGITKQMTATKRRKKN* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1934 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Gso5g1934 186 Gene3D - 14 84 IPR036879 GO:0003677|GO:0046983
Gso5g1934 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso5g1934 186 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 177 - -
Gso5g1934 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso5g1934 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso5g1934 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso5g1934 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso5g1934 186 Coils Coil 96 116 - -
Gso5g1934 186 PANTHER MADS BOX PROTEIN 2 177 - -
Gso5g1934 186 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Gso5g1934 186 Coils Coil 135 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1934 Gso-Chr5 42469533 42470487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1934 1 167 Type I MADS-box Gene Family AT2G34440 40.331 1.31e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso5g1934 SRF-TF 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1934 - - gmx:100791127 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1934 5 42469533 42470487 Gso8g0291 8 2727364 2728129 GST