Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1922 ATGGAGCGGTGGAGCACAACAGAGCTGAGGAAGAAGTCCCGCAATACGGATGAGGCTGGGAATGGTGGCTGTGTGGATTTACTGGTTCTGTTCAATCATGTAATATTGGTTCACTCCGATTCTGACATGATCATCTGTTTTCTAAACCTTTGCACATTTTGGGAATCCATCATTGTGTATGGAATTGCATTTCGATCTCAATCAAATTATAGTTTACAAGCAAATGCATATGTACATGGACACCATTGCATCCTCTCCACAATTAAATACCGTGTACCAGGATTGTCTAATGGTCCTGGTGGTGTTACTGTGAAGAAGACCGGCGCGGCCTTGATCATTGGCATTTATGACGAACCAATGGCTCCAGGTCAATGCAACATGGTAGTGGAAAGGCTTGGTGATTATCTCATTGAACAGGGTCTCTAA 426 0.4366 MERWSTTELRKKSRNTDEAGNGGCVDLLVLFNHVILVHSDSDMIICFLNLCTFWESIIVYGIAFRSQSNYSLQANAYVHGHHCILSTIKYRVPGLSNGPGGVTVKKTGAALIIGIYDEPMAPGQCNMVVERLGDYLIEQGL* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1922 141 SMART prof_2 17 141 IPR005455 GO:0003779
Gso5g1922 141 Gene3D Dynein light chain 2a, cytoplasmic 78 141 - -
Gso5g1922 141 PANTHER PROFILIN-2 97 141 - -
Gso5g1922 141 PRINTS Plant profilin signature 94 109 IPR005455 GO:0003779
Gso5g1922 141 PRINTS Plant profilin signature 114 127 IPR005455 GO:0003779
Gso5g1922 141 PRINTS Plant profilin signature 127 140 IPR005455 GO:0003779
Gso5g1922 141 PANTHER PROFILIN 97 141 IPR005455 GO:0003779
Gso5g1922 141 Pfam Profilin 72 140 IPR005455 GO:0003779
Gso5g1922 141 SUPERFAMILY Profilin (actin-binding protein) 67 140 IPR036140 -
Gso5g1922 141 PRINTS Profilin signature 110 123 IPR005455 GO:0003779
Gso5g1922 141 PRINTS Profilin signature 123 140 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1922 Gso-Chr5 42364215 42367906 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1922 96 141 Cytoskeleton Gene Families AT4G29350 76.087 1.35e-19 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1922 K05759 - gmx:100499717 93.5893