Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1917 ATGAAGAACCCAACCCCCAATCCAACCCATTTATGTCTTGAATGTAGAAACTTGATTTGGACAAGCTCAAGAGCATTCCATCAGTATCTTGAGCTCCAAATGGAGAACACCTGGATCCTGAGTTTTCACCTTCTCCTCCTCCTGCTCCATCCAAATGCAGCAAAAGGGGCCATCAGTGTTGGTGTTGGTGTTGGTGTGGGTGTTGGTGTTGGTGTTGGCATTGGCATTGGCAACAGCCCAGGCCCCTCTGGCTCCACTGGATCAAACCTGAAGAATGCCTTCACAGCACTCCAGGCATGGAAATCTGCCATCACTGATGACCCATTGAAGATTTTGGATACTTGGGTTGGTTCCAATGTGTGTTCCTACAAAGGTGTCTTCTGTGCAAACTCTGAGGATGATAATGGAATCGTGACAACAGCAGCAACTGAGTCTTCTGTTGTTGCAGGAATAGATCTCAACCATGCAAACCTCCAAGGGACTCTTGTCAAAGAGCTCTCTTTGCTCTCTGACATCACACTTTTCCACCTCAACAGCAACAGGTTTTCTGGCTCACTTCCTGACACATTCAGGGACCTCACTTCACTCGAAGAGTTGGACCTCAGCAACAACCAACTCTCAGGCCCTTTCCCCATGGCCACTCTATCCATGCCAAACCTCATCTACTTGGACCTCAGATTCAACAACTTCTCTGGCCAACTTCCTGATCAACTCTTCAACAAGAAACTTGATGCTATATTCCTCAACAACAACAACTTTGGAGGTGAAATTCCAGACAATTTGGGAAACTCACCTGCCTCAGTGATCAACTTGGCCAACAACAAGTTGAGCGGAAGCATCCCTTTCAGCTTTGGCTTCATGGGTTCAAGACTAAAGGAGATTCTCTTCCTTAACAACCAGTTAACAGGTTGCATTCCCCAGGGAGTAGGGATCTTCACTGAGATGCAAGTTTTTGATGTCAGTTTCAACTCACTCATGGGCCATTTGCCTGACACAATGAGTTGCTTGCAAGACATAGAGGTTCTTAATTTGGCACATAACAAGCTTTCTGGGGAATTATCCGAAGTGGTATGCTCCTTGAGAAGCCTATTAAATCTAACCGTTGCTTACAATTTCTTCTCTGGGCTGAGCCAGGAATGTTCAAGGCTATTCAGTGTGGGGTTTGATTTCTCGGATAACTGTATTCCTGGAAGGGATATGCAAAGACCACAACCAGAGTGCTCTATAATCCCTGGTGGTAGTCTAAATTGTCTTAGAATTCCTACTCCAAAGCCTCTTGTTTGCGCTGCAACTTTGTCTAAGCACACAAATTCACGTTCCTCTTCTCCCTGA 1332 0.458 MKNPTPNPTHLCLECRNLIWTSSRAFHQYLELQMENTWILSFHLLLLLLHPNAAKGAISVGVGVGVGVGVGVGIGIGNSPGPSGSTGSNLKNAFTALQAWKSAITDDPLKILDTWVGSNVCSYKGVFCANSEDDNGIVTTAATESSVVAGIDLNHANLQGTLVKELSLLSDITLFHLNSNRFSGSLPDTFRDLTSLEELDLSNNQLSGPFPMATLSMPNLIYLDLRFNNFSGQLPDQLFNKKLDAIFLNNNNFGGEIPDNLGNSPASVINLANNKLSGSIPFSFGFMGSRLKEILFLNNQLTGCIPQGVGIFTEMQVFDVSFNSLMGHLPDTMSCLQDIEVLNLAHNKLSGELSEVVCSLRSLLNLTVAYNFFSGLSQECSRLFSVGFDFSDNCIPGRDMQRPQPECSIIPGGSLNCLRIPTPKPLVCAATLSKHTNSRSSSP* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1917 443 ProSiteProfiles Leucine-rich repeat profile. 195 216 IPR001611 GO:0005515
Gso5g1917 443 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 441 - -
Gso5g1917 443 PANTHER LRR/EXTENSIN 33 441 - -
Gso5g1917 443 Pfam Leucine rich repeat N-terminal domain 93 128 IPR013210 -
Gso5g1917 443 Pfam Leucine rich repeat 175 230 IPR001611 GO:0005515
Gso5g1917 443 Gene3D Ribonuclease Inhibitor 264 385 IPR032675 -
Gso5g1917 443 SMART LRR_typ_2 360 383 IPR003591 -
Gso5g1917 443 SMART LRR_typ_2 217 241 IPR003591 -
Gso5g1917 443 SMART LRR_typ_2 169 192 IPR003591 -
Gso5g1917 443 SMART LRR_typ_2 193 216 IPR003591 -
Gso5g1917 443 Gene3D Ribonuclease Inhibitor 92 263 IPR032675 -
Gso5g1917 443 PRINTS Leucine-rich repeat signature 196 209 - -
Gso5g1917 443 PRINTS Leucine-rich repeat signature 336 349 - -
Gso5g1917 443 SUPERFAMILY L domain-like 94 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1917 Gso-Chr5 42337200 42338786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1917 86 417 Leucine-rich Repeat extension Gene Families AT3G22800 50.450 1.39e-105 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1917 - - gmx:100786358 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1917 5 42337200 42338786 Gso8g0272 8 2583558 2585312 GST