Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1916 ATGAAGATCGAGGAATTGGACGATGGAGAGTGTAGTAGGGACCATGAAGAGAAGTTTGAGAGGCAGATTGTGAGCGTTGATGCCAAGAGAGCGTTGGTTGGAGCAGGTGCTCGGATCCTGTTCTATCCCACACTCTTGTATAATGTGCTTCGTAACAAGATTGAAGCTGAGTTCAGGTGGTGGGATCAAATTGACGAGTTTTTGTTACTGGGCGCTGTTCCGTTCCCCAAAGACGTTCCTCACTTGAAGAAGCTTGGTGTGGGTGGTGTGATTACTCTCAACGAGCCCTATGAAACCTTGGTGCCATCGTCGTTGTATCGGGCTCACGGGATTGATCATTTGGTGATTCCCACCAGAGATTATCTCTTTGCCCCCTCATTTGTGGATATCAACCGGGCTGTGCAGTTCATTCATCAGAATGCAACTTGCGGTAAAACTACTTATGTTCACTGTAAAGCTGGTCGGGGGAGGAGTACAACAATTGTGCTTTGTTATCTGGTTGAATACAAACACATGACGCCTGCTACTGCCCTGGAATATGTTCGGTCTCGAAGACCTAGAGTGCTACTAGCACCGTCACAGTGGAAGGCTGTTCAAAACTATAACAAGCGAAGGCCTTCTCCTTTACCATACTCCCCCTCTGGGGATGCAGTACTTATAACCAAAGCTGATCTTGAAGGCTATCATAGCACAGGTGATGCTGGTATGGAACTGGCGATAGTTCCTAAAATGCTGAAGACTAAGCCCATGATTGCAAGATTATCTTGTCTGTTTGCATCCTTAAAAGTATCCGGCAGTAGTGTACCAATGACCAGGCGGTTGCCGGTTTCTGAGTCACGTGCTTGCTAA 849 0.4711 MKIEELDDGECSRDHEEKFERQIVSVDAKRALVGAGARILFYPTLLYNVLRNKIEAEFRWWDQIDEFLLLGAVPFPKDVPHLKKLGVGGVITLNEPYETLVPSSLYRAHGIDHLVIPTRDYLFAPSFVDINRAVQFIHQNATCGKTTYVHCKAGRGRSTTIVLCYLVEYKHMTPATALEYVRSRRPRVLLAPSQWKAVQNYNKRRPSPLPYSPSGDAVLITKADLEGYHSTGDAGMELAIVPKMLKTKPMIARLSCLFASLKVSGSSVPMTRRLPVSESRAC* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1916 282 SMART dsp_5 63 204 IPR020422 GO:0006470|GO:0008138
Gso5g1916 282 Gene3D Protein tyrosine phosphatase superfamily 60 206 IPR029021 -
Gso5g1916 282 Pfam Dual specificity phosphatase, catalytic domain 82 203 IPR000340 GO:0008138|GO:0016311
Gso5g1916 282 PANTHER - 1 282 - -
Gso5g1916 282 CDD PTPMT1 60 204 IPR044596 GO:0004721
Gso5g1916 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 60 207 IPR020422 GO:0006470|GO:0008138
Gso5g1916 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Gso5g1916 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 203 IPR029021 -
Gso5g1916 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 196 IPR000387 GO:0016311|GO:0016791
Gso5g1916 282 PANTHER OS01G0739200 PROTEIN 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1916 Gso-Chr5 42326536 42328757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1916 22 270 Protein tyrosine phosphatase (PTP) family AT2G35680 52.560 1.66e-99 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1916 - - gmx:100786889 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1916 5 42326536 42328757 Gso8g0271 8 2571453 2573565 GST